CN189903

Overview
NameCN189903
Unique NameCN189903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189903 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.450e-72
Identity = 127/172 (73.84%), Postives = 153/172 (88.95%), Query Frame = -3 
Query:  252 KKLSEIGLPIMSADHIVKVYEDEPVLQAFKLMRRKKIGGIPVVEKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 767
            K LSE+GLPIMS DHI+K+YEDEPVLQAFKLMRRK+IGGIPV+E+   K VGNISLRD+QFLLTAPEIYHDYRSIT KNFL +VR+++E+     +P++SG++ C++NHT+KELI +LD++KIHRIYVVD  GNLEG+ITLRDII+RLVHEP GYFGDFFDGV+PLPEN RV
Sbjct:  253 KTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVMPLPENYRV 424
The following BLAST results are available for this feature:
BLAST of CN189903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH3.450e-7273.84SNF1-related protein kinase regulatory subunit gam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002J14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189903 ID=CN189903; Name=CN189903; organism=Citrus sinensis; type=EST; length=769bp
TTATCCAAGGACCATTAAAGTGTTCCAATTATTAGACTAATTTACAGAAA
GGGACTAACATGGGTTTGGTGGATACAGAAACTGAGAAACATGTACAGAA
GATCTAACTCAGCTAAGCAAGATGGTTTTCTATTACATCAGCATGAAATA
AACTACGTTACAATCACTGCATCCAACCAGTCTCCGACACACCAACATCA
GACAGAAGCAAATGATCAGTTGCTGAAAACATGAGGGGCTTGTTACCTTT
AGACCCTGCTATTCTCAGGCAATGGCAAGACTCCATCGAAGAAATCACCA
AAGTAGCCTGGAGGCTCGTGTACTAGCCTTGAGATGATGTCTCTCAATGT
GATCACACCTTCCAAATTCCCATTAAAATCCACCACATAAATTCGATGAA
TTTTTTTGGAATCAAGCAGATGGATTAATTCCTTTATTGTGTGGTTTCTG
CTGCATGTTACCATGCCACTTAACAATGGTGAGTCCTCATGATGATGTTC
TTCCATGTACTTTCTAACTGCTGTCAGGAAGTTCTTAGCAGTGATAGATC
TATAATCGTGATAGATCTCTGGTGCAGTTAAAAGGAACTGAATATCTCTC
AGGCTTATATTACCCACGGCCTTATTACCGCCTTTTTCAACAACAGGTAT
GCCTCCAATTTTCTTTCTCCTCATCAACTTAAATGCCTGAAGCACTGGTT
CATCCTCGTACACCTTGACAATATGATCAGCTGACATTATGGGGAGACCA
ATTTCAGATAACTTCTTCT
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