CN189887

Overview
NameCN189887
Unique NameCN189887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189887 vs. ExPASy Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 69/94 (73.40%), Postives = 77/94 (81.91%), Query Frame = -1 
Query:  384 QSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKXXXXXXXXXXXXXXQRQKAASEQAALNAKRQSSGGMWGWLAGAP 665
            Q++QL+Q+L EAE +NTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQK              QRQKAASEQAA+NAKRQ SGG+WGWLAG+P
Sbjct:  567 QTLQLRQELGEAELRNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTLETLQKELELLQRQKAASEQAAMNAKRQGSGGVWGWLAGSP 660
[Close]
BLAST of CN189887 vs. ExPASy Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = -1 
Query:  381 QSIQLKQDLTEAESQNTDLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKXXXXXXXXXXXXXXQRQKA-ASEQAA-LNAKRQSSGGMWGWLAGAPP 665
            Q++QLK++L E +++NT+LYKELQSVR QLAAEQSRCFKLEV+VAELRQK              QRQ+A ASEQAA +NAKRQSSGG+WGWLAG PP
Sbjct:  549 QTLQLKEELAEIDTRNTELYKELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQRAVASEQAATMNAKRQSSGGVWGWLAGTPP 645
The following BLAST results are available for this feature:
BLAST of CN189887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ACBP4_ARATH3.877e-3173.40Acyl-CoA-binding domain-containing protein 4 OS=Ar... [more]
ACBP5_ARATH3.396e-2767.01Acyl-CoA-binding domain-containing protein 5 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002J04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189887 ID=CN189887; Name=CN189887; organism=Citrus sinensis; type=EST; length=665bp
AGGTTTTTGATTAATGTGATTCATAATAAAATTACATTTATAATAATCCT
GAACCAAAGTTTACCGGCAAACAATGGAAACCTATATCGTCGCTGGAATA
AAATATACTCAGTTACAAAAAAATTGGTACACTAAGATATTTCACTAGCA
GCCATATCAACTTTAACTAAACTACATGTATTTCATTCCCCCCACCAAAA
AAAAAAAAAAGGATCCTGCGTCGGCTTTGGATTTCATCTTGGGCAACATG
AATTTTCTTACCATCAAAGAAACAACCGGTTGTTGAAACCAAAATGATAA
AAACTGATAAATGGAAATCAAATCTAGCAATTGATACTCATTGAGACTAA
CAAGTTTTAAGCATCATAAGCATTTTGGGTAGGAGGGGCTCCAGCAAGCC
AACCCCACATGCCACCTGAGCTCTGCCTCTTTGCATTTAAGGCTGCTTGT
TCAGAGGCAGCCTTTTGCCGCTGCAGGAGTTCAAGTTCCTTTTGTAATGT
CTCCATTGTTTGTAACTTCTGTCTTAGTTCGGCAACATCAACCTCTAATT
TGAAACATCTTGACTGCTCTGCAGCAAGTTGACCACGAACAGATTGGAGT
TCCTTGTACAGGTCTGTGTTTTGACTCTCGGCTTCTGTTAAGTCTTGCTT
TAGTTGGATAGACTG
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