CN189855

Overview
NameCN189855
Unique NameCN189855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3733 contig Csv1_Contig3733:25..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.517e-26
Identity = 65/156 (41.67%), Postives = 84/156 (53.85%), Query Frame = -1
Query:  234 PTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPTGY*VGKNRE 701
            P SE ++GLFY N   VY    +  SG  S T  AN +  Q                  T+C+A      K LQAA+D+ACG G ++C  IQ G +CY PN ++ HAS+AFNSYYQK+ R +GSCDF G A + T  P +G C FP    VG   +
Sbjct:  235 PVSEASWGLFYGNSTPVY---LLHVSG--SGTFLANDTTNQ------------------TYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIFPGSKKVGNRTQ 367          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 60/156 (38.46%), Postives = 84/156 (53.85%), Query Frame = -1
Query:  261 NQKPGPTSERNYGLFYPNEQTVYDSPFVSTSG----NSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 716
            N+K G  SERN+GLFYP++ +VY   F   S     NSS T ++  S +                    WC+A++ A E+ L+ A+D+ACG G  DC  IQ    C+ P+TL +HAS+ FNSY+Q+      +C FGGA   V + P Y KC + T
Sbjct:  320 NRKAGLDSERNWGLFYPDQTSVYQLDFTGKSNGFHSNSSGTNSSGSSNS--------------------WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKCIYIT 455          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 59/149 (39.60%), Postives = 79/149 (53.02%), Query Frame = -1
Query:  264 KPGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFP 710
            +PGP SE+N+GLFY N   VY       +G   +    N                      QT+C+A      K LQAA+D+ACG G  DC  + +G +CY+P+ + AH++YAFN+YYQK  + +GSCDF G A V T  P  G C FP
Sbjct:  320 RPGPVSEKNWGLFYTNGTPVYTLRLAG-AGAILANDTTN----------------------QTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTCVFP 445          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.131e-25
Identity = 62/164 (37.80%), Postives = 87/164 (53.05%), Query Frame = -1
Query:  267 NQKPGPTSERNYGLFYPNEQTVYD-----------SPFVSTSGNS---SSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 716
            N+KPG  SERN+G+FY N   VY            SP  ST+G S   SS+P  N + T                  + WC+A++ A   +LQ A+D+ACG G  DC  +Q    C++P+T+ +HASYAFN+YYQ+    +  C F GA+  V + P YG C +
Sbjct:  319 NRKPGIESERNWGMFYANGTNVYALDFTGENTTPVSPTNSTTGTSPSPSSSPIINGNST-------VTIGGGGGGGTKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLY 475          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.200e-25
Identity = 59/150 (39.33%), Postives = 77/150 (51.33%), Query Frame = -1
Query:  267 NQKPGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 716
            NQKPGP +ER++GLF P+   VYD   +    + + TP+ N S                      WCVA   A    LQ  I+YACG    DC+PIQ G  C+ PN+L+AHASY  N+YYQ       +CDF G   V +  P YG C++
Sbjct:  320 NQKPGPIAERHFGLFNPDFTPVYDLGLLRDGASVAPTPSPNPSPNPSPKPAPSGGGK--------WCVAKDGANGTDLQNNINYACGF--VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGCKY 459          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = -1
Query:  267 NQKPGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 716
            +++ GP SERN+G+ +PN  +VY    +S SG SSS      S                      +CVA A+A + KL   +++ACG+G A+C  IQ G  CY PN +++HAS+AFN YYQK     G+CDF G A   T+ P Y  C +
Sbjct:  321 DKRSGPVSERNWGILFPNGTSVYP---LSLSGGSSSAALNGSSM---------------------FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSYRTCAY 446          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.248e-24
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = -1
Query:  258 NQKPGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPTG 716
            N KPGP+SER +GLF  +   VYD     +S +SS TP+   + +                    WCV    A  ++LQA++D+ACG G  DC  IQ G  C++PN + +HA+YA N Y+QK  ++   CDF   A V +Q P Y  C +P G
Sbjct:  319 NLKPGPSSERAFGLFKTDLSMVYDVGLAKSS-SSSQTPSGKVTSSG-------------------WCVPKKGATNEELQASLDWACGHG-IDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNCVYPGG 450          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = -1
Query:  240 SERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPTGY*VGKN 695
            SE+N+GLF  N + VY    V    NS S  A + +                    QT+C A   A  K LQAA+D+ACG G  DC PI++G TCY+P+ + AHA+YAF++YY +      +C+F G A + T  P +G C F      G+N
Sbjct:  333 SEKNWGLFNANGEPVY----VLRLTNSGSVLANDTTN-------------------QTYCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTCVFAGSRGNGRN 461          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  261 QTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 527
            + WCVA  NA +  LQ AI++ACG+GGADC PIQ+G  C DP  ++  AS+ FN+YY K   +  +C+F   A + +  P  G C++P+
Sbjct:   39 ELWCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPS 127          
BLAST of CN189855 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  261 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 524
            +WCV      +  LQA +DYACG G ADC P +   +C++P+ + +H +YA NS++QK+ +  GSC+F G A      P Y  C FPT
Sbjct:   20 SWCVCKTGLSDTVLQATLDYACGNG-ADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPT 106          
The following BLAST results are available for this feature:
BLAST of CN189855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
E131_ARATH2.517e-2641.67Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E1313_ARATH5.608e-2638.46Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E133_ARATH9.565e-2639.60Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1312_ARATH2.131e-2537.80Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E13B_WHEAT6.200e-2539.33Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E134_ARATH3.077e-2438.67Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E137_ARATH5.248e-2437.91Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_ARATH6.416e-2237.50Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13L1_ARATH8.671e-1943.82Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E13L2_ARATH3.643e-1742.05Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0002I10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189855 ID=CN189855; Name=CN189855; organism=Citrus sinensis; type=EST; length=716bp
AATAATGGACTAAATTCATAATCATTAGAATAAATACAATAAGGATTTGA
TCATATTGACACTAGAGTCAAACCAACTGATAACAACCGCACCCACTCAG
CGTACTAGTATATAAAATTTAAATACAAGGGAGAAAAATTAATGTTCCAA
TCGTCTAAATCTATCAGAAAAAATCATCACCAATCGTAAGCCGCGAGAAA
GCTCCAAATCTGCAGACCACAAATCAGCTAATGCTCCCTATTTTTTCCCA
CTCAATAGCCAGTTGGGAACTGGCATTTTCCATATTTAGGAGCCTGCGTG
ACCACGTAGGCCGCACCACCAAAATCACAAGATCCAGCCTTACGCACTTG
CTTCTGATAATAACTATTGAAGGCATACGATGCATGGGCTTCTAACGTGT
TAGGATCGTAACACGTGGCGCCCTCTTGAATCGGACGGCAATCAGCGCCT
CCCTCGCCGCAGGCATAATCAATTGCGGCTTGCAACTTTTTCTCACCAGC
ATTCGCGTTAGCCACGCACCAAGTCTGTCCCGCCGCCGAGGGCGACACGT
CACCACCGCCTCCTCCGCTCACCGGAACTTGAGTCTTGCTCTTATTGGCT
GCCGGCGTTGAGCTTGAGTTCCCACTAGTTGACACAAACGGCGAGTCGTA
CACCGTCTGTTCGTTGGGATAAAACAACCCGTAATTCCTTTCCGATGTGG
GACCCGGTTTTTGATT
back to top