CN189849

Overview
NameCN189849
Unique NameCN189849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189849_ssr1 microsatellite CN189849_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11510 contig Csv1_Contig11510:77..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189849 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.035e-41
Identity = 93/187 (49.73%), Postives = 110/187 (58.82%), Query Frame = 2 
Query:  104 KVSPFDLMSAIIRGGKXXXXXXXXXXXXXXXXXXX--LDNKEFVMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQKEGGEWL 652
            K+SPF+LMSAI++G K                     L+NKE VMILTTS+AVLIGCVVV I                             D+GK+K TIFFGTQTGTAEGFAKALA+EA+ARY+KA+ KV+              K +KE + FF LATYGDGEPTDNAARFYKWF E  + G+WL
Sbjct:    7 KLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLIGCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPEEIDEGKKKFTIFFGTQTGTAEGFAKALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFYKWFVEGNDRGDWL 193
[Close]
BLAST of CN189849 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 75/145 (51.72%), Postives = 85/145 (58.62%), Query Frame = 2 
Query:  227 VMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXXD--DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEQK-EGGEWL 652
            ++I TTS AV++G +V                              D   GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA  KVV              KLKKE++VFF LATYGDGEP DNAARFYKWFTE K E G WL
Sbjct:   28 LLIATTSAAVVVGLLVFLWKKSSDRSKEVKPVVVPRDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLYEEKLKKESLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIWL 172
The following BLAST results are available for this feature:
BLAST of CN189849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCPR_CATRO4.035e-4149.73NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU3.543e-2951.72NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189849 ID=CN189849; Name=CN189849; organism=Citrus sinensis; type=EST; length=652bp
GAGAGAGAGAGGGGTCTTCTCTTCTCCCGTTCCATTTCCACTCGCTCTCC
GACAAATTCATACTATGCAATCATCATCGTCGTCATCAGAATCAGGCACG
ATGAAAGTATCGCCGTTCGACTTGATGTCCGCGATCATTAGAGGTGGCAA
GGTCGATCCGTCCAACGTGTCGTCGTCCGGTTCAGGAGTTGAAGTTGCTT
CGATTGTGCTCGACAATAAGGAGTTCGTTATGATCTTGACCACGTCTATT
GCCGTCCTCATCGGCTGCGTCGTCGTTTTTATTTTGCGGAGATCTAGTAG
CTCCAAGCCAAAGAAGCTTGAGCCGCTCAAGCCTTTGGTTGTTAAAGAGC
CGGAAGTTGAGGTCGATGATGGAAAGCAGAAGGTCACTATCTTCTTCGGT
ACTCAAACTGGCACAGCTGAAGGATTTGCTAAGGCTTTAGCTGACGAAGC
CAGGGCTCGATATGATAAGGCCATTTTTAAAGTCGTCGATATTGATGATT
ACGCCGACGAGGAAGATGAATATGAAGAGAAATTGAAGAAAGAGAATATA
GTATTTTTCTTCTTGGCTACATATGGAGATGGTGAGCCAACCGACAATGC
AGCTAGGTTCTATAAATGGTTTACGGAGCAGAAAGAGGGAGGGGAGTGGT
TA
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