CN189840

Overview
NameCN189840
Unique NameCN189840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2756 contig Csv1_Contig2756:1870..2622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189840 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.357e-64
Identity = 116/152 (76.32%), Postives = 127/152 (83.55%), Query Frame = -2 
Query:  294 YAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTREDRARAWSELQLAAKQKKTRPFYRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILRPFSIIKKREPQKDD 749
            YAA+I GV V+GYLFWT SDNWEWADGYGPKFGLVAVDRANNLAR PRPSY LF++VVTTGK+TR+DR  AW ELQ AA QKKTRPF+RAV+KHG MYAGGLD P QRP+I RDWRFGHY+MEGLQDPLS   RCI  PFS  KK    +DD
Sbjct:  489 YAAIIMGVRVLGYLFWTTSDNWEWADGYGPKFGLVAVDRANNLARKPRPSYFLFSRVVTTGKITRQDRMSAWRELQQAAVQKKTRPFFRAVDKHGRMYAGGLDRPIQRPFILRDWRFGHYKMEGLQDPLSCFIRCIFAPFSRQKKIHYIEDD 640
[Close]
BLAST of CN189840 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.231e-59
Identity = 109/165 (66.06%), Postives = 132/165 (80.00%), Query Frame = -2 
Query:  273 VYAAMITGVPVIGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFTKVVTTGKVTREDRARAWSELQLAAKQKKTRPFYRAVNKHGLMYAGGLDEPTQRPYIQRDWRFGHYQMEGLQDPLSRLSRCILRPFSIIKKR-----EPQKDDAELVVQP 752
            +YAAM+ GVPV+GY+FWTISDNWEWADGYGPKFGLVAVDR+++LAR  R SYHLF+K+V +GKVTR+DR+ AW+ELQ AAK  K RPFYR V+ H LMYA GLD+P  RP++ RDWRFGHYQM+GLQDPLSR++R +L    I+KKR         DDA LV+ P
Sbjct:  451 LYAAMLKGVPVLGYIFWTISDNWEWADGYGPKFGLVAVDRSHDLARTLRQSYHLFSKIVKSGKVTRKDRSLAWNELQKAAKAGKLRPFYRGVDNHNLMYADGLDKPQWRPFVDRDWRFGHYQMDGLQDPLSRVARTLLIWPLIMKKRIRKVKIKHTDDAGLVLHP 615
The following BLAST results are available for this feature:
BLAST of CN189840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SFR2_ORYSJ4.357e-6476.32Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]
SFR2_ARATH3.231e-5966.06Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002I03_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189840 ID=CN189840; Name=CN189840; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTATTAAGATGATTTCTTGCATACGTAATTTGTTT
TCCAAATTAATTATTTATACAACATTTCATTTGCATCATTTCTAAGAAAA
ATAACCAATCTGTTTCAATAATATATGACCGCCAGGCGCCAACATCCTTA
TGAACATCATTTATCTGTTGCAACAGATACCTTTAAGCAATTGAATCATG
TCCTCGGTAGCTTTAGAGAAGGAAATCATAAAGATCGCCAGCAGAGATAG
GCACTTAGATACTGAATTGAAGAGGTTGGACAACCAATTCAGCATCATCC
TTCTGAGGTTCTCTTTTCTTTATAATAGAGAATGGTCTCAGAATGCATCT
TGATAAGCGGCTTAGTGGGTCCTGCAGACCTTCCATCTGATAGTGTCCAA
ACCGCCAATCTCGTTGGATATAAGGCCGTTGAGTTGGTTCATCAAGGCCT
CCTGCATACATCAATCCATGTTTATTAACTGCCCGATAGAATGGTCGTGT
CTTTTTTTGTTTAGCAGCTAATTGAAGTTCACTCCATGCACGTGCTCGGT
CTTCACGTGTGACTTTACCAGTAGTGACTACCTTGGTAAATAGATGGTAC
GAAGGACGAGGAATGCGGGCAAGATTGTTTGCCCGGTCCACTGCAACGAG
TCCAAACTTGGGACCATACCCATCAGCCCATTCCCAATTGTCAGAAATAG
TCCAAAAAAGATAACCAATCACAGGGACACCTGTAATCATGGCAGCATAA
ACA
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