CN189802

Overview
NameCN189802
Unique NameCN189802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189802_ssr304 microsatellite CN189802_ssr304:304..315. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5285 contig Csv1_Contig5285:487..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189802 vs. ExPASy Swiss-Prot
Match: TKTC_SPIOL (Transketolase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2 
Query:    5 VGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 127
            VGSKGKAIGID+FGASAPAGKIY+E+GIT EAV+ AAK VC
Sbjct:  701 VGSKGKAIGIDKFGASAPAGKIYQEYGITVEAVVEAAKSVC 741
[Close]
BLAST of CN189802 vs. ExPASy Swiss-Prot
Match: TKTC_CRAPL (Transketolase, chloroplastic (Fragment) OS=Craterostigma plantagineum GN=TKT3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.715e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 2 
Query:    5 VGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 124
            VGSKGKAIGIDRFGASAPAGKIY+EFGIT EAV+ AAKE+
Sbjct:  479 VGSKGKAIGIDRFGASAPAGKIYEEFGITVEAVVAAAKEL 518
[Close]
BLAST of CN189802 vs. ExPASy Swiss-Prot
Match: TKT7_CRAPL (Transketolase 7 OS=Craterostigma plantagineum GN=TKT7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.213e-12
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:    5 VGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 127
            +G KGKA+GIDRFGASAPA +++KEFGIT EAV+ AAKE+C
Sbjct:  636 IGPKGKAVGIDRFGASAPAERLFKEFGITVEAVVAAAKEIC 676
[Close]
BLAST of CN189802 vs. ExPASy Swiss-Prot
Match: TKTC_SOLTU (Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.809e-12
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:    5 VGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEV 124
            VG KGKAIGID FGASAPA KIYKEFGITAEAV+ AAK+V
Sbjct:  701 VGDKGKAIGIDGFGASAPADKIYKEFGITAEAVVAAAKQV 740
[Close]
BLAST of CN189802 vs. ExPASy Swiss-Prot
Match: TKTA_CRAPL (Transketolase 10 OS=Craterostigma plantagineum GN=TKT10 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:    5 VGSKGKAIGIDRFGASAPAGKIYKEFGITAEAVITAAKEVC 127
            VG KG+A+GIDRFGASA A ++YKEFGIT EAV+ AAKE+C
Sbjct:  639 VGLKGRAVGIDRFGASASAERLYKEFGITVEAVVAAAKELC 679
The following BLAST results are available for this feature:
BLAST of CN189802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TKTC_SPIOL4.715e-1382.93Transketolase, chloroplastic OS=Spinacia oleracea ... [more]
TKTC_CRAPL4.715e-1387.50Transketolase, chloroplastic (Fragment) OS=Cratero... [more]
TKT7_CRAPL5.213e-1273.17Transketolase 7 OS=Craterostigma plantagineum GN=T... [more]
TKTC_SOLTU6.809e-1285.00Transketolase, chloroplastic OS=Solanum tuberosum ... [more]
TKTA_CRAPL5.764e-1173.17Transketolase 10 OS=Craterostigma plantagineum GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002H02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189802 ID=CN189802; Name=CN189802; organism=Citrus sinensis; type=EST; length=410bp
GAGGGTTGGAAGCAAAGGAAAGGCCATCGGCATTGACCGATTCGGTGCTA
GTGCACCAGCAGGCAAAATATACAAGGAGTTTGGTATCACCGCGGAGGCT
GTTATCACTGCAGCCAAAGAAGTCTGCTAAGCTTGGTTAGTCAAAAACTT
CTTATTATTCCATATGCATTTGGGAATTGGTGATTACAGTGAAGAGACCA
TTCCCAAGAGAGTTGCTTCATTATGGTCTCTCTTGTTTTAATAAAAGCAA
GATTATTTTTCTTCCTTTTGCTTATTATTCCACTGCAGAGCATCGTAGAT
TGAAGAGAGAGAGAGGGAGAGAGAGTAGGGCTTGTTCATGTTCATGAATT
TGTATCAAACTCTTGGACCTATCTTGAGATTTGTAATGTTTCCTGTTGAT
TTTGATGCAA
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