CN189792

Overview
NameCN189792
Unique NameCN189792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8138 contig Csv1_Contig8138:445..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.273e-60
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = -2
Query:  351 DNVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 740
            DNVPPGTVV  +VCHPRNYDFY+CAHAGMIGT+RPTHYHVL DEIGFS D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+QVG+F+KFED+S+ SSSQGG TS G VPVP+LPRL EKV +SMFFC
Sbjct:  782 DNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC 911          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.318e-57
Identity = 104/130 (80.00%), Postives = 117/130 (90.00%), Query Frame = -2
Query:  351 DNVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 740
            +NVPPGTVV N VCHPRN DFY+CAHAGMIGT+RPTHYH+L DEIGFS+D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+QV  F+KF+++SETSSS GG TSAG  PVP+LPRL  KV +SMFFC
Sbjct:  775 NNVPPGTVVDNAVCHPRNNDFYMCAHAGMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAGSAPVPELPRLHNKVRSSMFFC 904          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.475e-50
Identity = 94/130 (72.31%), Postives = 108/130 (83.08%), Query Frame = -2
Query:  351 DNVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 740
            DNVPPGTVV + + HPR YDFY+ AHAG IGTSRPTHYHVL DEIGF  D++Q+LV SLSYVYQRSTTAISVVAPICYAHLAA+Q+G FMKFE+ +ETSS  GG+ S+    VP+LPRL   VC+SMFFC
Sbjct:  754 DNVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTSRPTHYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFAETSSGSGGVPSSSGAVVPELPRLHADVCSSMFFC 883          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.044e-46
Identity = 89/129 (68.99%), Postives = 101/129 (78.29%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            NVPPGTVV   +CHPRN DFY+CAHAGMIGT+RPTHYHVL DE  F+ D+LQELVH+LSYVYQRSTTAIS VAPICYAHLAA+QV  F++ +D +   S  GG   A P PVP+LPRL   V  SMFFC
Sbjct:  764 NVPPGTVVDKGICHPRNCDFYMCAHAGMIGTTRPTHYHVLHDENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFVRLDDAASEGSGDGG---APPRPVPELPRLHPDVRQSMFFC 889          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFE--DLSETSSSQG-GMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV  ++CHP  +DFYLC+HAG+ GTSRPTHYHVL+DE  F++D LQ L ++L Y Y R T A+SVV P  YAHLAA +   +++ E  D   T  S G  +   GPV V QLP+++E V + MF+C
Sbjct:  927 NILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRPTHYHVLYDENHFTADALQSLTNNLCYTYARCTRAVSVVPPAYYAHLAAFRARYYVEGESSDGGSTPGSSGQAVAREGPVEVRQLPKIKENVKDVMFYC 1058          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.163e-31
Identity = 63/129 (48.84%), Postives = 87/129 (67.44%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV +K+CHP  +DFYLC+HAG+ GTSRP HYHVL+DE  F++DE+Q L ++L Y Y R T ++SVV P  YAHLAA +   +M+  ++SE  ++    T      V  LP ++EKV   MF+C
Sbjct:  852 NILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYME-PEMSENQTTSKSSTGTNGTSVKPLPAVKEKVKRVMFYC 979          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 68/141 (48.23%), Postives = 88/141 (62.41%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTS------------AGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV +K+CHP  +DFYLC+HAG+ GTSRP HYHVL+DE  F++DELQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+ E     S + G  TS            AG V V  LP L+E V   MF+C
Sbjct:  978 NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADELQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSRGLPPGVRSARVAGNVAVRPLPALKENVKRVMFYC 1118          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO11_ORYSJ (Protein argonaute 11 OS=Oryza sativa subsp. japonica GN=AGO11 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 64/134 (47.76%), Postives = 87/134 (64.93%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDL-----SETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV  K+CHP  +DFYLC+H+G+ GTS PTHY+VLFDE  FS+D LQ L + L Y Y R T ++S+V P+ YAHLAAS+   +++   L     S  S++ G   +   VPV  LP ++E V   MF+C
Sbjct:  759 NILPGTVVDTKICHPSEFDFYLCSHSGIQGTSHPTHYYVLFDENNFSADALQTLTYHLCYTYARCTRSVSIVPPVYYAHLAASRARHYLEEGSLPDHGSSSASAAGGSRRNDRGVPVKPLPEIKENVKQFMFYC 892          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO14_ORYSJ (Protein argonaute 14 OS=Oryza sativa subsp. japonica GN=AGO14 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSS--SQGGMTSAG--PVPVPQLPRLQEKVCNSMFFC 737
            NV PGTVV   +CHP  +DFYLC+HAG+ GTSRPTHYHVL DE  FS+D+LQ L ++L Y Y R T ++SVV P  YAHLAA +   + +   +   SS  S G   +AG  P  V +LP+++E V + MF+C
Sbjct:  920 NVRPGTVVDTNICHPSEFDFYLCSHAGIQGTSRPTHYHVLHDENRFSADQLQMLTYNLCYTYARCTRSVSVVPPAYYAHLAAFRARYYDEPPAMDGASSVGSGGNQAAAGGQPPAVRRLPQIKENVKDVMFYC 1052          
BLAST of CN189792 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = -2
Query:  351 NVPPGTVVANKVCHPRNYDFYLCAHAGMIGTSRPTHYHVLFDEIGFSSDELQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGSFMKFEDLSETSSSQGGMTSAGPVPVPQLPRLQEKVCNSMFFC 737
            N+ PGTVV   +CHP  +DFYLC+H+G+ GTSRPTHYHVL DE GF +D LQ L ++LSY Y R T A+S+V P  YAHL A +   +M+ E   + SSS   +T+        LP ++E V   MF+C
Sbjct:  923 NILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRPTHYHVLLDENGFKADTLQTLTYNLSYTYARCTRAVSIVPPAYYAHLGAFRARYYMEDEHSDQGSSS--SVTTRTDRSTKPLPEIKENVKRFMFYC 1049          
The following BLAST results are available for this feature:
BLAST of CN189792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
AGO4B_ORYSJ1.273e-6083.85Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ1.318e-5780.00Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ3.475e-5072.31Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ3.044e-4668.99Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
MEL1_ORYSJ7.280e-3251.52Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
PNH1_ORYSJ6.163e-3148.84Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGO1B_ORYSJ1.373e-3048.23Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO11_ORYSJ1.373e-3047.76Protein argonaute 11 OS=Oryza sativa subsp. japoni... [more]
AGO14_ORYSJ1.518e-2950.38Protein argonaute 14 OS=Oryza sativa subsp. japoni... [more]
AGO12_ORYSJ1.518e-2948.84Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189792 ID=CN189792; Name=CN189792; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTTTAAAACATGCCAATCATTCCAATTTCCGATACCC
GAATGCCTGAATCCATCAAAATAACAGTTTAACAGCCCATCGCTGTCTGG
GGAAATAGAGAGACTGGCGAATGCATGGGACTGGCAAGAGTCAACAACAC
CAGTAATCACCACAAAAACAAAGGCACAGGGCACTTTCGGTTTCTAGACC
TAAAATTAAATAGCAGAGATTTTCAAGGCATCACTACAAGTTCTAGACAC
CTTTGCCACTGGATGGTCCAGATGAAAACCAAAAGGCTAACTATATACAA
ACTACTTTGATAGGATTCTGATTGACGGTAGAAGCCACACAAGTGTCTCA
ACAGAAGAACATTGAATTGCACACTTTCTCCTGCAGTCTAGGCAGCTGGG
GGACAGGAACAGGTCCAGCAGATGTCATCCCACCCTGGCTAGAAGATGTC
TCTGATAAGTCTTCGAACTTCATGAATGATCCTACCTGGCTTGCTGCCAA
GTGGGCATAGCAAATTGGAGCAACTACAGAAATGGCTGTAGTGCTTCTCT
GGTACACATAAGAAAGTGAGTGCACTAGTTCCTGCAGCTCATCACTTGAA
AAGCCAATTTCATCAAATAGAACGTGGTAATGTGTTGGCCTTGAAGTACC
AATCATTCCAGCATGGGCACAAAGGTAGAAGTCATAGTTTCTTGGATGAC
AGACTTTGTTGGCAACAACAGTTCCAGGAGGAACATTGTCA
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