CN189784

Overview
NameCN189784
Unique NameCN189784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189784_ssr14 microsatellite CN189784_ssr14:14..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC1_PEA (Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 409.838 bits (1052), Expect = 7.945e-114
Identity = 192/213 (90.14%), Postives = 206/213 (96.71%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VPPGIP+KR ++EPLRVNVLFKHIQ ++SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA DKRVIACIGDGSFQVTAQ+ISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTG V+AIHNG+GKCWTAKVR+E++LTEA+ TATG +KDSLCFIEVF HKDDTSKELLEWGSRV+AANSRPPNPQ
Sbjct:  381 VPPGIPLKREKDEPLRVNVLFKHIQALISGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAATDKRVIACIGDGSFQVTAQDISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGFVSAIHNGQGKCWTAKVRTEEDLTEAIATATGAEKDSLCFIEVFAHKDDTSKELLEWGSRVAAANSRPPNPQ 593          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 1.605e-106
Identity = 182/213 (85.45%), Postives = 194/213 (91.08%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VP   P     NEPLRVNVLFKHI+ MLSGD+AV+AETGDSWFNCQKLRLPE CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQ++STM+RCGQ+SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHN EG CWT KVR+E++L EA+ T TG +KD LCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  398 VPDREPPNGKPNEPLRVNVLFKHIKGMLSGDSAVVAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNSEGNCWTMKVRTEEQLKEAIATVTGAKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 610          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.358e-105
Identity = 177/213 (83.10%), Postives = 196/213 (92.02%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            +P   P     +EPLRVN+LFKHI++MLSGDTAVIAETGDSWFNCQKLRLPE CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVI+CIGDGSFQ+TAQ++STM+RCGQ+SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGL++AIHN +G CWT KVR+E+EL EA+ TATG +KD LCFIE+ VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  393 IPDREPPNGQPDEPLRVNILFKHIKEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.358e-105
Identity = 177/213 (83.10%), Postives = 196/213 (92.02%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            +P   P     +EPLRVN+LFKHI++MLSGDTAVIAETGDSWFNCQKLRLPE CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVI+CIGDGSFQ+TAQ++STM+RCGQ+SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGL++AIHN +G CWT KVR+E+EL EA+ TATG +KD LCFIE+ VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  393 IPDREPPNGQPDEPLRVNILFKHIKEMLSGDTAVIAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVISCIGDGSFQMTAQDVSTMLRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC2_PEA (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pisum sativum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.774e-105
Identity = 179/213 (84.04%), Postives = 195/213 (91.55%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VP G P+K A  EPLRVNV+F+HIQ MLS +TAVIAETGDSWFNCQKL+LPE CGYEFQMQYGSIGWSVGATLGYAQA  +KRVIACIGDGSFQVTAQ++STM+RCGQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHNGEGKCWT KV  E+EL EA+  ATG +KDSLCFIEV VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  193 VPDGTPLKSASKEPLRVNVMFQHIQKMLSSETAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELVEAIAKATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 405          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 381.333 bits (978), Expect = 3.026e-105
Identity = 179/213 (84.04%), Postives = 194/213 (91.08%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VP G P++   NEPLRVNVLFKH+Q ML+ D+AVIAETGDSWFNCQKL+LPE CGYEFQMQYGSIGWSVGA LGYAQ AKDKRVIACIGDGSFQVTAQ++STMIRC Q SIIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHNGEGKCWT+KV+ E+ELTEA+  A GE+KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  394 VPEGQPLESEPNEPLRVNVLFKHVQKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALGEKKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 606          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 9.735e-104
Identity = 179/213 (84.04%), Postives = 193/213 (90.61%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VP G P++   NEPLRVNVLFKH+Q ML+ D+AVIAETGDSWFNCQKL+LPE CGYEFQMQYGSIGWSVGA LGYAQ AKDKRVIACIGDGSFQVTAQ++STMIRC Q SIIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHNGEGKCWT+KV+ E+ELTEA+  A GE KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  394 VPEGQPLESEPNEPLRVNVLFKHVQKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYAQGAKDKRVIACIGDGSFQVTAQDVSTMIRCAQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALGE-KDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 605          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 5.000e-100
Identity = 177/239 (74.06%), Postives = 194/239 (81.17%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGY--------------------------EFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VP G P+K   NEPLRVNVLF+HIQ MLS +TAVIAETGDSWFNCQKL+LPE CGY                          EFQMQYGSIGWSVGATLGYAQ+   KRVI+CIGDGSFQVTAQ++STMIRC Q++IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHNGEG CWT KVR+E+ELTEA+ TATGE+KD LCFIEV VHKDDTSKELLEWGSRV +AN RPPNPQ
Sbjct:  376 VPEGTPLKSEPNEPLRVNVLFQHIQKMLSDETAVIAETGDSWFNCQKLKLPEGCGYVTNNSLSAWYPFYLQTLEEKSSCCRYEFQMQYGSIGWSVGATLGYAQSVPKKRVISCIGDGSFQVTAQDVSTMIRCEQKNIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGNCWTMKVRTEEELTEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVCSANGRPPNPQ 614          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC3_MAIZE (Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea mays GN=PDC3 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 3.033e-97
Identity = 168/202 (83.17%), Postives = 184/202 (91.09%), Query Frame = -3
Query:  118 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 723
            NEPLRVNVLFKH+Q ML+GD+AVIAETGDSWFNCQKL+LPE CGYEFQMQYGSIGWSVGA LGY Q A  KRVIA IGDGSFQVTAQ++ST++RC Q SIIFLINNGGYTIEVEIHDGPYNVIKNW+YTG V+AIHNG GKCWT+KV+SE++LT A++TA GE KD LCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:    2 NEPLRVNVLFKHVQKMLTGDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYPQGANHKRVIAFIGDGSFQVTAQDVSTILRCEQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGFVDAIHNGLGKCWTSKVKSEEDLTAAIETALGE-KDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 202          
BLAST of CN189784 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.962e-97
Identity = 172/215 (80.00%), Postives = 186/215 (86.51%), Query Frame = -3
Query:  118 VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT--AVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQVTAQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSRPPNPQ 756
            VP G   +    E LRVNVLFKHIQ M+ G    AV+AETGDSWFNCQKLRLPE CGYEFQMQYGSIGWSVGA LGYAQA + KRV+ACIGDGSFQVTAQ++STM+RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDY GLVNAIHNGEG+CW  +VR E+EL  A+ TATG++ DSLCFIEV  HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  374 VPEGQLPECEAGEALRVNVLFKHIQRMIGGTEIGAVMAETGDSWFNCQKLRLPEGCGYEFQMQYGSIGWSVGALLGYAQAVQ-KRVVACIGDGSFQVTAQDVSTMLRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFIEVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587          
The following BLAST results are available for this feature:
BLAST of CN189784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PDC1_PEA7.945e-11490.14Pyruvate decarboxylase isozyme 1 OS=Pisum sativum ... [more]
PDC1_MAIZE1.605e-10685.45Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC1_ORYSJ1.358e-10583.10Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI1.358e-10583.10Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC2_PEA1.774e-10584.04Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pis... [more]
PDC2_ORYSI3.026e-10584.04Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_ORYSJ9.735e-10484.04Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_TOBAC5.000e-10074.06Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC3_MAIZE3.033e-9783.17Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea... [more]
PDC3_ORYSJ3.962e-9780.00Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189784 ID=CN189784; Name=CN189784; organism=Citrus sinensis; type=EST; length=758bp
CTTTATCAACATCCTCTCTCTCTTATTTCTAGCTTTGATACATGTTTTAG
GATATAGGCCAAGAATACTGCAGTTGAAATAACAGAAACTCAAAATCCTC
AACACTTCAAAGTGCTATTGAGGATTTGGAGGGCGGCTGTTGGCTGCAGA
AACCCTGGATCCCCACTCCAGCAGCTCTTTGCTGGTGTCATCCTTGTGCA
CAAATACTTCGATAAAACATAGAGAATCTTTTTGTTCTCCAGTAGCTGTC
TTCATTGCTTCTGTTAGTTCATCTTCACTCCGCACCTTGGCAGTCCAGCA
TTTTCCTTCTCCATTGTGGATGGCATTTACCAGGCCAGTATAATCCCAGT
TCTTAATCACATTGTAAGGCCCATCATGAATCTCTACTTCAATTGTATAC
CCGCCATTGTTGATAAGGAATATGATGCTCCTTTGTCCACATCGAATCAT
CGTTGATATCTCCTGAGCAGTTACCTGGAAACTTCCATCACCAATGCAAG
CAATCACACGCTTATCTTTAGCAGCCTGAGCATATCCTAGGGTGGCACCA
ACTGACCAGCCAATGGATCCATACTGCATCTGAAATTCATATCCACAATT
CTCGGGGAGGCGGAGCTTCTGACAGTTAAACCAAGAGTCTCCAGTTTCAG
CGATTACTGCAGTGTCTCCACTCAGCATGTCCTGAATGTGTTTGAAGAGA
ACATTGACTCGAAGAGGCTCATTTTGCGCACGCTTCACTGGAATGCCAGG
AGGGACAT
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