CN189761

Overview
NameCN189761
Unique NameCN189761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2747 contig Csv1_Contig2747:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189761 vs. ExPASy Swiss-Prot
Match: SNP33_ARATH (SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.987e-62
Identity = 118/167 (70.66%), Postives = 133/167 (79.64%), Query Frame = -3 
Query:  182 LVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRARLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXLNIRVKDANLRGRRLLGK 682
            LV LH QGEQITRTH+ A  IDHDLSRGEKLLGSLGGMFS+TWKPKKTRPI GPV+TRDD   RR NHLE+REKLGLN+  +GQS TR  LPE  DAYQ++E+EK+KQDD LS+LS ILGELKNMA DMGSEI++QNK           LN RV+ +N RGRRLLGK
Sbjct:  134 LVMLHDQGEQITRTHHKAVEIDHDLSRGEKLLGSLGGMFSKTWKPKKTRPINGPVVTRDDSPTRRVNHLEKREKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQRGRRLLGK 300
[Close]
BLAST of CN189761 vs. ExPASy Swiss-Prot
Match: SNP30_ARATH (Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.829e-47
Identity = 99/167 (59.28%), Postives = 122/167 (73.05%), Query Frame = -3 
Query:  182 LVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRARLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXLNIRVKDANLRGRRLLGK 682
            L  LHQQGEQI RTH  A  +D DLSRGEKLL +LGGMFS+ WKPKKT+ I GP+IT D P ++  NH E+REKLGL   +KG+S+++  L +PT+A QK+E EK+KQDD LS+LS ILG+LK+MA DMGSEID+QNK+          LN RV+ AN R R LL K
Sbjct:   99 LEMLHQQGEQINRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSENHKEEREKLGLG--AKGRSSSQPALDQPTNALQKVEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGANQRARHLLSK 263
[Close]
BLAST of CN189761 vs. ExPASy Swiss-Prot
Match: SNP29_ARATH (SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 93/167 (55.69%), Postives = 116/167 (69.46%), Query Frame = -3 
Query:  182 LVSLHQQGEQITRTHYTAASIDHDLSRGEKLLGSLGGMFSRTWKPKKTRPIMGPVITRDDPVQRRGNHLEQREKLGLNNTSKGQSNTRARLPEPTDAYQKIEVEKSKQDDALSELSGILGELKNMATDMGSEIDRQNKSXXXXXXXXXXLNIRVKDANLRGRRLLGK 682
            LV L++QG+QITRTH     +DH LSRGEK+LG LGG+FSRTWKPKK+R I GPVIT+ D  +R+   L+ REKLGLN + K +S T   LPE  DAYQK ++  +KQD+AL++LS +LGELKNMA DMG+ I+RQ             LN RVK +N R R LL K
Sbjct:   90 LVMLNEQGDQITRTHQKTVDLDHHLSRGEKILGRLGGVFSRTWKPKKSRSITGPVITKGDSPKRKVIDLKTREKLGLNPSLKPKSKT---LPEAVDAYQKTQI--AKQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDNADELNYRVKQSNQRARYLLRK 251
The following BLAST results are available for this feature:
BLAST of CN189761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SNP33_ARATH9.987e-6270.66SNAP25 homologous protein SNAP33 OS=Arabidopsis th... [more]
SNP30_ARATH1.829e-4759.28Putative SNAP25 homologous protein SNAP30 OS=Arabi... [more]
SNP29_ARATH3.946e-4255.69SNAP25 homologous protein SNAP29 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002G02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189761 ID=CN189761; Name=CN189761; organism=Citrus sinensis; type=EST; length=684bp
CTTTTTTTTAGGAAAATTGAATCTCAATTAGAATGAATTACGGTCATAAA
TTGTGTGAATGAAAATTTACTGAAAATCCAAATCCATGTAAGATCTATCC
GTATCCAGATTCATATATCTGCACGAGTTACAACAGTTGAGTATCAGCAG
ATCTGTCCCGGAAGCAAATCTGAAAACTCTACTTTCCAAGTAAGCGGCGA
CCGCGTAGATTAGCATCCTTCACACGAATGTTTAGCACATCCACGTCGTC
ATCAAGATAATCCAAACTCTTGTTCTGCCTGTCAATTTCAGACCCCATAT
CTGTAGCCATATTTTTTAGTTCTCCCAGAATACCACTTAATTCAGATAGT
GCATCATCCTGCTTTGACTTTTCTACCTCAATTTTCTGATAAGCATCTGT
GGGTTCAGGCAGTCGAGCTCTTGTGTTTGACTGTCCTTTGGATGTGTTAT
TTAATCCCAACTTCTCTCTTTGCTCCAAGTGGTTGCCCCTTCTTTGGACC
GGGTCATCTCTAGTAATAACAGGTCCCATAATTGGACGGGTCTTCTTCGG
CTTCCATGTCCTAGAGAACATCCCACCTAGGCTTCCTAAAAGCTTTTCAC
CCCGACTAAGATCGTGATCAATGCTGGCAGCAGTATAGTGGGTCCTGGTA
ATTTGCTCACCCTGCTGGTGCAAGCTTACCAAAG
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