CN189759

Overview
NameCN189759
Unique NameCN189759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1291 contig Csv1_Contig1291:251..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189759 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.304e-68
Identity = 128/199 (64.32%), Postives = 142/199 (71.36%), Query Frame = 1
Query:   13 KTLPFFATGTPKRQITVKSLQKRSKNL-SPLRVXXXXXXXXXXXEETVRKDEKEDYGSLVDDEYG--KESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMGSQGLLFVWPDEYG 600
            K +PF +  T K  + V     RSK   +PLRV            E  R          +++EYG  KE   S+F WRDHWYPVSLVEDLDPN+PT FQLLGRDLVLWFD N  KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+ GPEARA++SPRACA +FPTM SQGLLFVWPDE G
Sbjct:   19 KKIPFLSP-TTKFPLKVSISPSRSKLFHNPLRVAAPPSVPTSDSTEEKR----------IEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENG 206          
BLAST of CN189759 vs. ExPASy Swiss-Prot
Match: CAO_DUNSA (Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.006e-16
Identity = 45/124 (36.29%), Postives = 61/124 (49.19%), Query Frame = 1
Query:  235 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRAC----ATRFPTMGSQGLLFVWPDE 594
            R+ WYP    + L+P +   F L G   VL+ D +S       D C HR  PLS G++  NGH+QC YHGW FDG G+CT++P             S R C        P +   G ++VWP +
Sbjct:  131 RNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAP-TCIKDSCAHRACPLSLGKVI-NGHVQCPYHGWEFDGSGACTKMP-------------STRMCHGVGVAALPCVEKDGFVWVWPGD 239          
BLAST of CN189759 vs. ExPASy Swiss-Prot
Match: CAO_CHLRE (Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 42/132 (31.82%), Postives = 61/132 (46.21%), Query Frame = 1
Query:  202 GKESS-DSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMGSQGLLFVWPDE 594
            G ESS + +   R+ WYP      L  +    F+L G   V++ D          D+C HR  PLS G++ E G + C YHGW F+G G+CT++P      P  R +          P     G ++VWP +
Sbjct:  290 GLESSMEIEEGLRNFWYPAEFSARLPKDTLVPFELFGEPWVMFRDEKGQP-SCIRDECAHRGCPLSLGKVVE-GQVMCPYHGWEFNGDGACTKMPST----PFCRNVG-----VAALPCAEKDGFIWVWPGD 410          
The following BLAST results are available for this feature:
BLAST of CN189759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO_ARATH4.304e-6864.32Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
CAO_DUNSA1.006e-1636.29Chlorophyllide a oxygenase, chloroplastic OS=Dunal... [more]
CAO_CHLRE1.662e-1131.82Chlorophyllide a oxygenase, chloroplastic OS=Chlam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189759 ID=CN189759; Name=CN189759; organism=Citrus sinensis; type=EST; length=600bp
GAGGCACCAAGAAAAACCCTTCCATTTTTTGCCACAGGAACCCCGAAGCG
ACAAATCACGGTAAAAAGCTTGCAAAAAAGAAGCAAGAATTTGTCTCCAC
TGCGAGTGGCAGCTCCTCCTTCAGACCCTGCAGCATCAGATGAAGAAACG
GTGAGAAAAGATGAGAAAGAAGATTATGGATCATTAGTCGATGATGAGTA
TGGTAAAGAGAGTTCGGATTCTAAGTTTTCTTGGAGGGATCATTGGTACC
CAGTTTCTTTAGTTGAAGATTTGGACCCGAACTTGCCAACAGCGTTTCAG
CTTCTTGGGAGAGACTTAGTTCTTTGGTTTGATAACAATTCTAATAAATG
GGTTGCATTTGATGACAAATGCCCTCATAGACTCGCCCCATTATCGGAAG
GGCGGATCGATGAAAATGGGCATTTGCAGTGTTCATACCATGGATGGTCT
TTTGACGGGTGTGGATCTTGCACTCGCATTCCCCAAGCAGCATCTGAAGG
TCCTGAAGCTCGTGCAATTCAGTCTCCCAGAGCGTGTGCTACGAGGTTTC
CTACAATGGGGTCTCAAGGCCTGCTATTCGTTTGGCCAGATGAGTATGGT
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