CN189721

Overview
NameCN189721
Unique NameCN189721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189721 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 75/127 (59.06%), Postives = 99/127 (77.95%), Query Frame = 3 
Query:  180 MSYRREHLASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGXXXXXXXXXXXXIRVL 560
            M++RRE+ AS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TGDIHEEVE+HNRLLD++GN MD++RGIMSGT++RFK+VFEKKSNR+ C L+             IR+L
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLL 125
[Close]
BLAST of CN189721 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 67/110 (60.91%), Postives = 92/110 (83.64%), Query Frame = 3 
Query:  180 MSYRREHLASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 509
            M+ RRE    + +LFD   G+EEGG++A+SSYS  I+EH+N++A++GL++R + LKRL+GDI+EEV++HNR+LDRMGN MD+SRG +SGTMDRFK VFE KS+RR+ TLV
Sbjct:    1 MNPRREPRGGRSSLFD---GIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLV 107
The following BLAST results are available for this feature:
BLAST of CN189721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET12_ARATH3.292e-3659.06Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
BET11_ARATH3.407e-3360.91Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002F03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189721 ID=CN189721; Name=CN189721; organism=Citrus sinensis; type=EST; length=690bp
GAGGAATCCGAATATTTTAAACAAGCAACTTTCTTTTTATTCGTTCTAAA
AATTTCTCCTTCCACTCCGCTGCATTTTCTCAGCATCCAAACAACTGATT
GATCACTGATGGATCATCAACTTGCGTGATCGTAGAAACAGAGACGAACG
CGCGCAGGAGCTGCCGGTTATCGTAAATCATGAGTTACAGAAGGGAGCAC
CTTGCTTCTAAAGGGGCTCTCTTTGATGAGTATGACGGCCTTGAGGAAGG
TGGTCTTAAGGCCTCATCCTCATATTCCAGTGGAATCGATGAGCATGACA
ATGATAAAGCAATCGACGGTCTGAAAGAAAGAGCAGTTTTTCTGAAGAGA
TTAACAGGCGACATACACGAGGAGGTAGAAAGTCATAATCGTTTGCTTGA
TCGAATGGGCAACAGTATGGATGCATCAAGGGGTATCATGTCAGGAACCA
TGGATCGCTTTAAGATGGTGTTCGAGAAGAAATCTAACCGGAGAATATGT
ACTCTAGTGGGATCTTTTGTGGTTTCCTTCTTCGTTCTCTACTATCTCAT
TAGGGTCCTCATGCGTGGTTGAAGTAGAACATTAAATCTTGCCTGTGCAA
GTCTGCAATTTGGGTATGGAAATTGGTTCACGTACAATTGTGCAGCTTGT
AATCTTCATCGCTAAATCCCTTTTTCCTTATCTTTTTGAA
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