CN189709

Overview
NameCN189709
Unique NameCN189709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189709_ssr148 microsatellite CN189709_ssr148:148..157. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1790 contig Csv1_Contig1790:97..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC3_PONAB (Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 60/209 (28.71%), Postives = 97/209 (46.41%), Query Frame = 3
Query:  123 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLHTFFIVMTL 698
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  KI     +++  F++P     S +  +   G+               H WN++WV   E+     WY ALL  +   Y+L+    GLL+ ++T P G  C  + FFI + L
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDG--CTENKFFISINL 245          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC3_BOVIN (Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLHTFFIVMTL 698
            AV R+S    +FF   S+LM+ VK  KDPR ++H+G W  KI     +++  F++P     + +  I   G+               H WN++WV   E+     WY ALL V+ + Y+L+  F+GLL+ ++T P G  C  + FFI   L
Sbjct:   96 AVYRISFALAVFFFAFSLLMLNVKTSKDPRAAIHNGFWFFKIAAIVGVMVGSFYIPGGHFNTAWFVIGMVGAAFFILIQLVLLVDFAHSWNESWVNRMEEGNPKCWYAALLSVTSLFYILSIIFAGLLYTYYTKPDG--CTENKFFISFNL 244          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 64/220 (29.09%), Postives = 97/220 (44.09%), Query Frame = 3
Query:  117 SARIAYCGLFALSLIVSWIL--REVAAPLMEKLPWINHFHKTPSR----------------EWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNE--IVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ------FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLHTFFIVMTL 698
            S RI Y  LF LS I +WI+  ++V+  LM+    +  +H T  R                 W E   V+R+     LF   LS+  +GV + KDPR SLH+G W +K+I     ++  FF+ N   I + +  I   G+               + WND+WVG  E+      F    L+  +++        + L+FH++T    DC L  FFI   L
Sbjct:   43 STRITYAILFFLSSIAAWIMLDKDVSKGLMK----VCCYHSTLFRLVLFTQPAIKTTTNVVPWGEL-GVMRIMFSVCLFHLFLSLCTIGVSSSKDPRSSLHNGMWFIKLILLVGAMVGSFFISNSFFIGASWSWIGLVGAVLFMIVQFILLVDFAYSWNDSWVGKLEEGSKCAGFGSYRLISATVMLMAFVITLTVLMFHFYT--NGDCKLSNFFIGFNL 255          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC3_HUMAN (Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14
Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  123 RIAYCGLFALSLIVSWIL-REVAAPLMEKLPWINH----FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT-PSGQDCGLHTFFIVMTL 698
            R+ Y  +  LS +VS+I+ R+     ++K+P         H+       + D      AV R+S    +FF + S+LM  VK  KD R ++H+G W  KI     +++  F++P     S +  +   G+               H WN++WV   E+     WY ALL  +   Y+L+    GLL+ ++T P G  C  + FFI + L
Sbjct:   39 RLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAALIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYYTKPDG--CTENKFFISINL 245          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC3_MOUSE (Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 44/150 (29.33%), Postives = 70/150 (46.67%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP-NEIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFTPSGQDCGLHTFFIVMTL 698
            AV R++    +FF    +LM+ VK  KDPR ++H+G W  KI     ++I  F++P       +      G+               H WN+ WV   E+     WY ALL  + + Y+L+  F+ LL+ ++T    DC  +  FI + L
Sbjct:   97 AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYT-KPDDCTENKVFISLNL 245          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC1_BOVIN (Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT 647
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYT 221          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC1_PONAB (Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT 647
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYT 221          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC1_HUMAN (Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT 647
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIVLFFVYYT 221          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC1_MOUSE (Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT 647
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAVVLFFVYYT 221          
BLAST of CN189709 vs. ExPASy Swiss-Prot
Match: SERC1_RAT (Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  264 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN---EIVSFYESISKFGSGXXXXXXXXXXXXXXHRWNDTWVGYDEQ----FWYVALLVVSLVCYVLTFGFSGLLFHWFT 647
            AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P      V FY  +   G+               H WN++WV   E+     WY ALL  + + Y+L+     L F ++T
Sbjct:   89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAVAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESWVEKMEEGNSRCWYAALLSATALNYLLSLVAIILFFVYYT 221          
The following BLAST results are available for this feature:
BLAST of CN189709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SERC3_PONAB1.927e-1528.71Serine incorporator 3 OS=Pongo abelii GN=SERINC3 P... [more]
SERC3_BOVIN3.286e-1533.11Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=... [more]
SERIC_MONBE2.130e-1429.09Probable serine incorporator OS=Monosiga brevicoll... [more]
SERC3_HUMAN2.782e-1428.23Serine incorporator 3 OS=Homo sapiens GN=SERINC3 P... [more]
SERC3_MOUSE1.526e-1229.33Serine incorporator 3 OS=Mus musculus GN=Serinc3 P... [more]
SERC1_BOVIN2.204e-1131.11Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=... [more]
SERC1_PONAB2.879e-1131.11Serine incorporator 1 OS=Pongo abelii GN=SERINC1 P... [more]
SERC1_HUMAN2.879e-1131.11Serine incorporator 1 OS=Homo sapiens GN=SERINC1 P... [more]
SERC1_MOUSE3.760e-1131.11Serine incorporator 1 OS=Mus musculus GN=Serinc1 P... [more]
SERC1_RAT4.910e-1131.11Serine incorporator 1 OS=Rattus norvegicus GN=Seri... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189709 ID=CN189709; Name=CN189709; organism=Citrus sinensis; type=EST; length=700bp
GAGGATCCCAGTTTGTGAGAGAAGAGAAGATGTGGGCGGCGTCTTGTCTT
GCGTCGTGCTGTGCGGCGTGCGCGTGTGACGCGTGTCGCTCGGCGGTGTC
GGGGATCAGCAGGAGGTCAGCTAGGATTGCTTACTGCGGGCTGTTTGCTC
TCTCTCTGATCGTTTCGTGGATTCTTCGTGAAGTCGCCGCTCCACTCATG
GAGAAGCTCCCTTGGATTAATCATTTTCATAAGACACCTAGCAGGGAGTG
GTTTGAAACTGATGCTGTTCTGCGAGTTAGCTTGGGAAATTTTCTCTTTT
TCACTATTTTGTCAATTTTAATGGTTGGCGTGAAAAATCAGAAAGATCCC
CGTGATAGCTTGCACCACGGTGGATGGATGATGAAAATTATTTGTTGGTG
CCTTCTGGTGATCTTTATGTTTTTCCTTCCAAATGAGATTGTCAGCTTCT
ATGAGTCAATATCAAAGTTTGGCTCGGGTTTGTTTCTTCTTGTTCAAGTT
GTCCTTTTATTGGACTTTGTTCACAGATGGAATGACACGTGGGTTGGATA
TGATGAGCAGTTCTGGTATGTTGCCCTATTGGTTGTTTCTCTTGTTTGTT
ACGTGCTGACATTTGGCTTCTCGGGACTTCTTTTCCATTGGTTCACACCA
TCAGGGCAGGATTGTGGGCTCCATACATTCTTCATTGTTATGACCTTGAT
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