CN189705

Overview
NameCN189705
Unique NameCN189705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig980 contig Csv1_Contig980:655..1353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189705 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.382e-60
Identity = 112/121 (92.56%), Postives = 117/121 (96.69%), Query Frame = -1
Query:  337 PRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 699
            PRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNL+GIWNFTNPGVVSHNEILEMY+ YINPEFKW NFTL+EQAKVIVAPRSNNEMDASKLKKEFPELLSIK+SLIKY + PNKKT
Sbjct:  549 PRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669          
BLAST of CN189705 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.739e-59
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = -1
Query:  337 PRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 699
            PRNFITKISRYNKVVNIPNSMT+LDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYK YI P+FKW NF L+EQAKVIVAPRSNNEMD +KL KEFPE+LSIKDSLIKYVFEPNK+T
Sbjct:  544 PRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664          
BLAST of CN189705 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.500e-57
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = -1
Query:  337 PRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 699
            PRNFITKISRYNKVV+IPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYK YI P FKW NFT++EQAKVIVA RSNNEMD SKL KEFPE+LSIK+SL+KYVFEPNK+T
Sbjct:  547 PRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667          
BLAST of CN189705 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 50/120 (41.67%), Postives = 80/120 (66.67%), Query Frame = -1
Query:  352 PRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPE----LLSIKDSLIKYVFE 699
            PR+FITKI  Y+++ +IPNSMT+LD+++P+ I+MA+    G +NFTNPG+VSHNEIL + +    P   W N + ++Q  ++ A RSNN ++  KL+  +P+    L  I++ + K  F+
Sbjct:  169 PRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTWENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288          
The following BLAST results are available for this feature:
BLAST of CN189705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH3.382e-6092.56Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH3.739e-5990.08Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH3.500e-5788.43Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV1.484e-2341.67Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189705 ID=CN189705; Name=CN189705; organism=Citrus sinensis; type=EST; length=699bp
GACGTTTTTTTTTTTTTTACATCGAACAGCATGCGGCCATATTCATTTAA
CAGATACTGCAAAAGTTACATACTAGCAACTAGCAGATGCCATTAAATAT
TAGCAACCTATTCTAGAAAAAATACACTAACCATATCTCAATAAAACTCC
AAGAAAAATAATGAAAGAAGCATGGCTAATTATCTCTAGTGCAGTAAATA
TAAAGTGATTACACCAAAAAGAAATGAGGAGTGAAGCTGATTAACAGTAC
AATGGTACTCCAAACCTATTATGTAATGCAGAATGTGTTGGTCAAACAAG
AGGCCCCTACAACTGAAAGCTGCTTAATGTACCCTAGGTTTTCTTGTTGG
GCTCAAAGACATACTTGATCAGTGAATCCTTGATGGATAGCAACTCAGGG
AACTCCTTCTTCAACTTAGAAGCATCCATCTCGTTGTTGCTTCTTGGGGC
GACTATCACCTTTGCTTGCTCATCTAATGTGAAGTTCACCCACTTGAATT
CTGGGTTAATGTACTTCTTGTACATCTCAAGAATTTCATTGTGGCTCACA
ACCCCAGGGTTTGTGAAGTTCCAAATACCCCTCAAGTTACGCTTTGCCAT
CTCAATTGAAATGGGGAGAAGTTCATCCAAAACAGTCATACTGTTTGGAA
TGTTGACCACCTTGTTATAACGAGAAATCTTGGTAATGAAGTTGCGGGG
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