CN189698

Overview
NameCN189698
Unique NameCN189698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189698_ssr142 microsatellite CN189698_ssr142:142..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2743 contig Csv1_Contig2743:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189698 vs. ExPASy Swiss-Prot
Match: Y5994_ARATH (Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.534e-14
Identity = 44/109 (40.37%), Postives = 53/109 (48.62%), Query Frame = 2 
Query:  437 FDYWDEDEFEGVPIQ--------------HPAPETDPTSIPEDALADQXXXXXXXXXXXXXXXXXXXXXXXXIEIVCVTFLIMFVINYFTGKRENENLALAWAAKFATK 721
            F+YWDEDEFEG+P++              H  P+T       +A  D                         +EI CV FLI   INYF GKRENE+LALAWAAKFA+K
Sbjct:   96 FEYWDEDEFEGLPVEIETLESPLITENGTHADPKTPDLKTSSEAQGDTNDQTKKKKSYA-------------VEIACVCFLIALAINYFVGKRENESLALAWAAKFASK 191
The following BLAST results are available for this feature:
BLAST of CN189698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5994_ARATH8.534e-1440.37Uncharacterized protein At5g49945 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189698 ID=CN189698; Name=CN189698; organism=Citrus sinensis; type=EST; length=721bp
GAGGCAATCATTGAAATTGAACAGTACTCATTTCCTTCTTTACCGCCATG
CCCTTCTGTCTCTCGTAAAACTCACCAGCCCAACAACCCCCAAAAACTGA
GTACTCCAATCGTCCAAAATGACGCACGTGCGCCTTTTGATTCTCTCTCT
CTTACTCATCTCTCTTTCCTTCACGCCCCCCCGCGCCGCCGCCACTACCG
ACTCCCACTTCGAAGGCTTCGACGCCGAAGACGACGTCGTCGAGGAGGAC
GACGAACAAACCCTAGACCTCCACAAACTCACCGATCTCCCCTTAACCCA
ATCCGATCCCTCATCATCACCACCCATCACAACAACCACTCCAGATACGA
ACCCAGATCCGAACCCGAACCCGACTCCCTCCCCCTCGGATCCCCAATCT
AAAACCCCTTCCTCCTCCCCGTCCCAAACGACGTCGTTTGACTACTGGGA
CGAAGACGAGTTCGAAGGCGTACCTATCCAACACCCCGCTCCCGAAACCG
ACCCGACGTCAATTCCCGAAGATGCCCTCGCCGATCAAACCACTTCGGAA
AGCAAAACGACGGGGGAATCCAAAAACGTGGCCGTTTCGAAGAAATCCTC
GTCGTACAAGATCGAGATTGTCTGCGTTACTTTTTTGATCATGTTTGTGA
TTAATTACTTCACTGGCAAGCGCGAGAATGAGAATCTGGCGCTTGCTTGG
GCGGCGAAGTTTGCGACAAAA
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