EY758040

Overview
NameEY758040
Unique NameEY758040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.488e-94
Identity = 165/176 (93.75%), Postives = 171/176 (97.16%), Query Frame = 1
Query:   61 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNL 588
            MVTFRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNL
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNL 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 6.129e-93
Identity = 163/176 (92.61%), Postives = 168/176 (95.45%), Query Frame = 1
Query:   61 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNL 588
            M  FRFHQYQVVGRALPTE D  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNL
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNL 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 5.189e-92
Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 1
Query:   70 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNL 588
            FRFHQYQVVGRALPTE+DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNL
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNL 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.845e-89
Identity = 156/176 (88.64%), Postives = 166/176 (94.32%), Query Frame = 1
Query:   61 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNL 588
            M  FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQIIKTAT+  KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNL
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNL 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.867e-49
Identity = 95/172 (55.23%), Postives = 122/172 (70.93%), Query Frame = 1
Query:   79 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            H++QVVGR +PTE D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T  GAV QMY EMASRH  R   I II    I A L +R +TKQFH+SKIKFPL  R       K ++T+ A RPN  +
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTFF 170          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.084e-47
Identity = 87/171 (50.88%), Postives = 123/171 (71.93%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+V+GR LP+ES+  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+  IQIIK   I A  C+R   KQFHNS I+FPL     R    K   T+   RP+  +
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPL---PKRVHHHKRLNTFAYKRPSTYF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 5.084e-47
Identity = 88/171 (51.46%), Postives = 122/171 (71.35%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN  +
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 5.084e-47
Identity = 88/171 (51.46%), Postives = 122/171 (71.35%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN  +
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.673e-47
Identity = 88/171 (51.46%), Postives = 122/171 (71.35%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN  +
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
BLAST of EY758040 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.673e-47
Identity = 88/171 (51.46%), Postives = 122/171 (71.35%), Query Frame = 1
Query:   82 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLVY 594
            +Y+VVGR LPT     P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T  GAV Q Y +M +RHR R+  IQI+K   I A  C+R + KQFH+SKIKFPL  R +R   R+ +  +   RPN  +
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176          
The following BLAST results are available for this feature:
BLAST of EY758040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA2.488e-9493.7560S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
R18A2_ARATH6.129e-9392.6160S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH5.189e-9292.4960S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_ORYSJ1.845e-8988.6460S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
RL18A_DICDI1.867e-4955.2360S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_SPOFR5.084e-4750.8860S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_HUMAN5.084e-4751.4660S ribosomal protein L18a OS=Homo sapiens GN=RPL1... [more]
RL18A_BOVIN5.084e-4751.4660S ribosomal protein L18a OS=Bos taurus GN=RPL18A... [more]
RL18A_RAT8.673e-4751.4660S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE8.673e-4751.4660S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-030-E01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758040 ID=EY758040; Name=EY758040; organism=Citrus sinensis; type=EST; length=920bp
CCCGCGTCCGGAGAGAGAGTTTACGCTGCGGAGATCGTCACATCTTGTAT
TTCCTCGAAAATGGTCACTTTCAGGTTTCACCAGTATCAGGTTGTTGGGA
GAGCTCTTCCAACTGAGTCCGATGAGCATCCTAAGATTTACAGGATGAAG
TTGTGGGCCACGAATGAGGTTCGAGCCAAGTCCAAGTTCTGGTACTTTCT
TAGAAAGCTCAAGAAGGTCAAGAAGAGTAATGGTCAAATGCTTGCCATTA
ACGAGATTTTTGAGAAGAACCCAACCAAGATCAAGAACTATGGCATCTGG
TTGCGTTATCAGAGTCGAACTGGTTATCACAATATGTACAAGGAGTACCG
TGATACCACTCTGAACGGGGCTGTGGAGCAGATGTACACTGAGATGGCTT
CTCGCCATAGGGTCAGGTCTCCTTGCATTCAAATTATCAAGACTGCTACC
ATCCCTGCCAAGCTATGCAAGAGAGAAAGCACCAAGCAGTTCCACAATTC
AAAAATCAAGTTTCCCTTGGTGTTCAGGAAGGTGAGACCACCAAGCAGGA
AGCTGAGGACCACATACAAAGCAACAAGGCCTAACTTGGTTTATGAACTC
TCTTATCCTTTGATAATTGAGACTTCAGGAGGGTTTACAGTGGATATCTA
TCTATTTTTCTAAAAATATTTTGGGAGTTCCTTTTAGGCAGTTGTTTTTG
GTCAACGGATTCCTGGTTTTATGTGAGAATATAAGGGGTTGAGACTAACG
AACCTGATCCTTGGGATTGCAAATTTATGTTTTGGTACCGGTTAAAAAAA
AAAAAAAAAAAAAGAGCGGGCCTTTTAAAGATCCAACTTACGTACCGGGG
CTGCAACCTTTAACCTTTCTTAAGGCCCCAAATTCATTCCGGGCGCCTTT
TTTAAGCCCGGATGTGGAAC
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