CN189695

Overview
NameCN189695
Unique NameCN189695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189695 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.450e-22
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = -1 
Query:  260 LHFLILYVPFFAKVFGIVPLSLNEWLLVLAVFLPVILIDEVLKFIGRCSSGWRHFRAHRPSTKTKEE 460
            LHF+ILYVPF A+VFGIVPLSLNEWLLVLAV LPVILIDEVLKF+GRC+SG+R +    PS K KEE
Sbjct:  996 LHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFVGRCTSGYR-YSPRTPSAKQKEE 1061
[Close]
BLAST of CN189695 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 9.310e-22
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = -1 
Query:  260 LHFLILYVPFFAKVFGIVPLSLNEWLLVLAVFLPVILIDEVLKFIGRCSSGWRHFRAHRPSTKTKEE 460
            LHF+ILYVPF A+VFGIVPLSLNEWLLVLAV LPVILIDEVLKF+GRC+SG+R +     STK KEE
Sbjct:  996 LHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFVGRCTSGYR-YSPRTLSTKQKEE 1061
[Close]
BLAST of CN189695 vs. ExPASy Swiss-Prot
Match: ECA2_ARATH (Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.592e-13
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = -1 
Query:  317 LHFLILYVPFFAKVFGIVPLSLNEWLLVLAVFLPVILIDEVLKFIGRC 460
            LH +ILYVPF A VFGIVPLS  EW +V+ V  PVILIDE LKFIGRC
Sbjct:  995 LHCVILYVPFLANVFGIVPLSFREWFVVILVSFPVILIDEALKFIGRC 1042
[Close]
BLAST of CN189695 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.546e-13
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = -1 
Query:  320 LHFLILYVPFFAKVFGIVPLSLNEWLLVLAVFLPVILIDEVLKFIGR 460
            LH +ILYVPF A +FGIVPLSL EWLLV+ +  PVILIDEVLKF+GR
Sbjct:  992 LHSVILYVPFLADIFGIVPLSLYEWLLVILLSAPVILIDEVLKFVGR 1038
The following BLAST results are available for this feature:
BLAST of CN189695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ECA4_ARATH2.450e-2277.61Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ECA1_ARATH9.310e-2277.61Calcium-transporting ATPase 1, endoplasmic reticul... [more]
ECA2_ARATH1.592e-1372.92Calcium-transporting ATPase 2, endoplasmic reticul... [more]
ECAP_SOLLC3.546e-1374.47Calcium-transporting ATPase, endoplasmic reticulum... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189695 ID=CN189695; Name=CN189695; organism=Citrus sinensis; type=EST; length=460bp
TTTTTTTTTTTTTTTTTGAAAACTTGGTTAATATTGCAAAATNTCCTAGG
TAGATTGTACATATTACAGAATCCTGGTTTGATCGATTCTAAACAAATTT
TCAGGGTGTCCAATATAACCCCTTACCAGGTTTAAAAGGGACCAAGGGTT
TAGATGCGAGGACCAAGAATTAAATAGAGTCAATTGCAATCAAAGATTGA
AGAACTCCCAATATAATCAATCTTTGCCGACTACAATCCTCCATTGGGTG
CTCACCTCACTCTTCCTTTGTCTTTGTTGATGGTCTATGTGCCCTAAAAT
GCCGCCACCCGCTTGAACATCTTCCAATGAACTTGAGTACCTCATCTATT
AGAATCACTGGTAAAAAAACGGCCAAGACCAAAAGCCATTCATTCAGACT
GAGAGGAACAATTCCAAATACTTTGGCAAAGAAAGGTACATAAAGGATCA
AAAAGTGCAG
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