CN189694

Overview
NameCN189694
Unique NameCN189694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189694 vs. ExPASy Swiss-Prot
Match: WIT1_ARATH (WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.118e-40
Identity = 83/194 (42.78%), Postives = 120/194 (61.86%), Query Frame = 2
Query:   65 MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVIE-ELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHIL---------DDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQISEIKKQSAKFQDLVS 607
            M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV +++EL  A  SEKLVNL++LTM + TRE++FE+F  K+E            DDDS E AL FDLLS +L+SE++ELE+ +  L+ +   A  +IS +   G+A +++E KL D+E SL Q  +Q+ E+KKQS+ FQ L S
Sbjct:    1 METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELDFAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLSSILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFLDLEGKLNDTEQSLGQLMEQVVEMKKQSSNFQRLSS 192          

HSP 2 Score: 54.299 bits (129), Expect = 5.118e-40
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 3
Query:  594 RTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAETARHFLRMLEKSLAREMD 764
            R  S LD +G+W   + + S  D +F + +AKI +QTA+  R+ LRMLEKSLA+EM+
Sbjct:  189 RLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRMLEKSLAKEME 245          
BLAST of CN189694 vs. ExPASy Swiss-Prot
Match: WIT2_ARATH (WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.552e-16
Identity = 53/139 (38.13%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  185 EELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDD--SVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQISEIKKQSAKFQ 595
            EE +    + ++LE+  A +SEKL+NL++L MH+   +++ E         LD    S E AL FDLL G+L+SE++E++  +  LEA  V     ISS        I +E KL +S +SL+QSR Q+SEI  Q A+ +
Sbjct:   18 EEEQEMLRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEGMGT-----LDSSPASFEKALTFDLLCGILESEVKEVDEVLDVLEAQIVDTSYKISSCKH--GNYIVIEGKLGESAESLKQSRGQVSEITLQLAQLR 149          

HSP 2 Score: 26.9498 bits (58), Expect = 9.552e-16
Identity = 14/40 (35.00%), Postives = 27/40 (67.50%), Query Frame = 3
Query:  648 GSLEDDQFLNENAKIKLQTAETA-RHFLRMLEKSLAREMD 764
            G+ E+++ +    K  L+ ++   ++ LRMLEKSL+RE++
Sbjct:  158 GTSENEESVELRQKYALKPSDLRHKNALRMLEKSLSRELE 197          
The following BLAST results are available for this feature:
BLAST of CN189694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WIT1_ARATH5.118e-4042.78WPP domain-interacting tail-anchored protein 1 OS=... [more]
WIT2_ARATH9.552e-1638.13WPP domain-interacting tail-anchored protein 2 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189694 ID=CN189694; Name=CN189694; organism=Citrus sinensis; type=EST; length=766bp
GAGGGTTTATTCTGCTCACGAACTCTGTCAAACCCAAGGTTCTGAGGCCA
GTAGGGCTACTGAAATGGATACTGATGCTGATCAGGAAACTAGCGCTTCT
GTTGTTGTTAATGTTGGTGATTCAGAGTCAGAATCGAATAAAGTTTACTC
GCTTGAAGGCATTTCGGCTAATGGGGATGTGATCGAAGAGCTAAGAAGTG
CCGGCGAGGTTTTCAGTCAATTGGAATTACACATAGCATGTTCTTCAGAG
AAGTTAGTTAACTTAAATATTCTTACGATGCATGTAGCAACCAGGGAAAG
TGAATTTGAAGCCTTTGCTAAAAAGAGAGAGCATATCTTGGATGATGATT
CTGTAGAGACAGCTCTGGCATTTGATCTCTTGTCTGGATTATTGGATTCA
GAGTTGAGAGAACTGGAAAATTTCATAACTACTCTTGAAGCTGATTTTGT
TAAAGCTCATGAGCTGATATCTTCATATACAGAGTTGGGGAAAGCATCCA
TAGAAATGGAAGAAAAGTTACTAGATTCTGAAGATTCATTGCAGCAGTCA
CGGGATCAAATCTCAGAAATTAAAAAGCAATCTGCTAAGTTCCAGGACCT
TGTCAGCTCTAGATAGAGAAGGAAATTGGATCAGTGACAAGGATACAGGC
AGTTTGGAAGATGACCAATTTTTGAATGAGAATGCCAAAATAAAATTGCA
AACGGCTGAAACAGCAAGACATTTTCTGAGGATGCTAGAAAAATCTTTGG
CGAGAGAGATGGATCT
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