CN189693

Overview
NameCN189693
Unique NameCN189693
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189693 vs. ExPASy Swiss-Prot
Match: WIT1_ARATH (WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.457e-11
Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = 2 
Query:   65 MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVIE-ELKSAGEVFTQLELRISCSSDKLVNLNILTMHVATRESEFEAFAKKREHIL---------DDDSVETAL 367
            M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV T++EL  +  S+KLVNL++LTM + TRE++FE+F  K+E            DDDS E AL
Sbjct:    1 METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELDFAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKAL 112
The following BLAST results are available for this feature:
BLAST of CN189693 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WIT1_ARATH1.457e-1141.23WPP domain-interacting tail-anchored protein 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189693 ID=CN189693; Name=CN189693; organism=Citrus sinensis; type=EST; length=503bp
TATGGTTTATTCTGCTCACGAACTCTGTCCAACCCAAGGTTCTGAGGCCA
GTAGGGCTACTGAAATGGATACTGATGCTGATCAGGAAACTAGCGCTTCT
GTTGTTGTTAATGTTGGTGATTCAGAGTCTGAATCGAATAAAGTTTACTC
GCTTGAAGGCATTTCGGCTAATGGGGATGTGATCGAAGAGCTAAAAAGTG
CCGGCGAGGTTTTCACTCAATTGGAATTACGCATATCATGTTCTTCAGAC
AAGTTAGTTAACTTAAATATTCTTACCATGCATGTAGCAACCAGGGAAAG
TGAATTTGAAGCCTTTGCTAAAAAGAGAGAGCATATCTTGGATGATGATT
CTGTAGAGACAGCTCTGGCTATTTGATCTCTTGTCTGGATTATTGGATTC
CCAGTTGACAGAACTGGAAAATTTCATAACTACTCTTGAAGCTGATTTTG
TTAAAGCTCATGAGCTGATATCTTCATATACAGAGTTGGGGAAAGCATCC
ATA
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