CN189686 | Citrus Genome Database

Overview


Name	CN189686
Unique Name	CN189686
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	686

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig760	contig	Csv1_Contig760:874..1559.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.159e-67
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDIVFVLQQKEHPKFKRKGDDLFVEHTLSL E+LCGFQF++THLDGRQLLIKS PGEVVKPDQFKAINDEGMPMYQRPFM+GKLYIHF+V  P
Sbjct:  249 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLVESLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFSVEFP 341

HSP 2 Score: 95.9005 bits (237), Expect = 6.159e-67
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1

Query:  274 DFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 426
            +FP+SL+P+QCK LE VLPPRTSVQL+DMELDECEETTLHDVNIEEEMRRK
Sbjct:  339 EFPDSLNPEQCKALEGVLPPRTSVQLSDMELDECEETTLHDVNIEEEMRRK 389

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.623e-64
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDIVFVLQQKEHPKFKRKGDDLF EH+LSLTEALCGFQFV+THLD RQLLIKS PGEV+KPDQFK INDEGMPMYQRPFMRGKLYIHF+V  P
Sbjct:  251 GDIVFVLQQKEHPKFKRKGDDLFYEHSLSLTEALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFSVDFP 343

HSP 2 Score: 90.1225 bits (222), Expect = 1.623e-64
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1

Query:  274 DFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 426
            DFP+SL+PDQCK LE+VLP R + +LTDME+DECEETT+HDVNIEEEMRRK
Sbjct:  341 DFPDSLTPDQCKALESVLPSRNASRLTDMEIDECEETTMHDVNIEEEMRRK 391

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.624e-64
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDIVFVLQQKEHPKF+RKGDDLF +HTLSLTEALCGFQFV+THLDGRQLLIKS PGEVVKPDQFKAINDEGMPMYQRPFMRGKLYI F V  P
Sbjct:  230 GDIVFVLQQKEHPKFQRKGDDLFYKHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFLVDFP 322

HSP 2 Score: 91.2781 bits (225), Expect = 1.624e-64
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1

Query:  268 LFDFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 426
            L DFP+SL+PDQCK++E+VLP   S QLTDME+DECEETT+HDVNIEEEMRRK
Sbjct:  318 LVDFPDSLTPDQCKVIESVLPRSASSQLTDMEIDECEETTMHDVNIEEEMRRK 370

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 5.570e-62
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDIVFVLQQKEHPKFKRKG+DLFVEHTLSLTEALCGFQFV+THLDGR LLIKS PGEVVKPD +KAI+DEGMP+YQRPFM+GKLYIHFTV  P
Sbjct:  251 GDIVFVLQQKEHPKFKRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFP 343

HSP 2 Score: 83.5741 bits (205), Expect = 5.570e-62
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1

Query:  274 DFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 426
            +FP+SLSPDQ K LE VLP  ++ QL+DME+DECEETTLHDVNIE+EMRRK
Sbjct:  341 EFPDSLSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLHDVNIEDEMRRK 391

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 3.886e-60
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDIVFV+QQKEHPKFKRKG+DLFVEHT+SLTEALCGFQFV+THLD RQLLIKS+PGEVVKPD +KAI+DEGMP+YQRPFM+GKLYIHFTV  P
Sbjct:  252 GDIVFVIQQKEHPKFKRKGEDLFVEHTISLTEALCGFQFVLTHLDKRQLLIKSKPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFTVEFP 344

HSP 2 Score: 79.7221 bits (195), Expect = 3.886e-60
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1

Query:  274 DFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 426
            +FPESLSPDQ K +E VLP  T   ++DME+D+CEETTLHDVNIE+EM+RK
Sbjct:  342 EFPESLSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVNIEDEMKRK 392

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.368e-42
Identity = 83/102 (81.37%), Postives = 90/102 (88.24%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP*VTEPRPVQ 308
            GDIVFVLQQKEHPKFKRKG+DLF EHTLSLTEALCGF+FV+THLDGRQLLIKS  GEVVKPDQFKAI DEGMP+YQRPFM+GK+YIHFTV  P    P  V+
Sbjct:  251 GDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFRFVLTHLDGRQLLIKSNLGEVVKPDQFKAIEDEGMPIYQRPFMKGKMYIHFTVEFPDSLNPDQVK 352

HSP 2 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1

Query:  274 DFPESLSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRRK 426
            +FP+SL+PDQ K LE +LPP+ S+ LT MELDECEETTLH+VNIEEEM+RK
Sbjct:  341 EFPDSLNPDQVKSLEAILPPKPSMSLTYMELDECEETTLHNVNIEEEMKRK 391

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJA1_RAT (DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.409e-25
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V  P
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFP 329

HSP 2 Score: 35.8094 bits (81), Expect = 7.409e-25
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1

Query:  274 DFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 423
            +FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  327 NFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.409e-25
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V  P
Sbjct:  236 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFP 328

HSP 2 Score: 35.8094 bits (81), Expect = 7.409e-25
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1

Query:  274 DFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 423
            +FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  326 NFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 373

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.409e-25
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V  P
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFP 329

HSP 2 Score: 35.8094 bits (81), Expect = 7.409e-25
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1

Query:  274 DFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 423
            +FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  327 NFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374

[Close]

BLAST of CN189686 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 7.409e-25
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 3

Query:    3 GDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFTV*LP 281
            GDI+ VL QK+H  F R+G+DLF+   + L EALCGFQ  I+ LD R ++I S PG++VK    K + +EGMP+Y+RP+ +G+L I F V  P
Sbjct:  237 GDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFP 329

HSP 2 Score: 35.8094 bits (81), Expect = 7.409e-25
Identity = 21/52 (40.38%), Postives = 31/52 (59.62%), Query Frame = 1

Query:  274 DFPES--LSPDQCKMLETVLPPRTSVQLTDMELDECEETTLHDVNIEEEMRR 423
            +FPE+  LSPD+  +LE +LP R  V+    E DE ++  L D +  +E RR
Sbjct:  327 NFPENGFLSPDKLSLLEKLLPERKEVE----ETDEMDQVELVDFDPNQERRR 374

The following BLAST results are available for this feature:

BLAST of CN189686 vs. ExPASy Swiss-Prot

BLAST of CN189686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27


Match Name	E-value	Identity	Description
DNJH_CUCSA	6.159e-67	90.32	DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P...	[more]
DNJH2_ALLPO	1.623e-64	89.25	DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE...	[more]
DNJH1_ALLPO	1.624e-64	90.32	DnaJ protein homolog 1 (Fragment) OS=Allium porrum...	[more]
DNAJ3_ARATH	5.570e-62	88.17	Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G...	[more]
DNAJ2_ARATH	3.886e-60	86.02	Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G...	[more]
DNJH_ATRNU	1.368e-42	81.37	DnaJ protein homolog ANJ1 OS=Atriplex nummularia P...	[more]
DNJA1_RAT	7.409e-25	49.46	DnaJ homolog subfamily A member 1 OS=Rattus norveg...	[more]
DNJA1_PONAB	7.409e-25	49.46	DnaJ homolog subfamily A member 1 OS=Pongo abelii ...	[more]
DNJA1_MOUSE	7.409e-25	49.46	DnaJ homolog subfamily A member 1 OS=Mus musculus ...	[more]
DNJA1_HUMAN	7.409e-25	49.46	DnaJ homolog subfamily A member 1 OS=Homo sapiens ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0002E05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN189686 ID=CN189686; Name=CN189686; organism=Citrus sinensis; type=EST; length=686bp
ACGGTGACATTGTATTTGTTCTACAACAGAAAGAGCACCCGAAATTTAAG
CGAAAGGGTGATGACCTATTTGTTGAGCACACCCTGTCACTGACAGAAGC
TCTCTGTGGCTTTCAATTTGTAATAACTCATTTGGATGGCCGGCAACTCC
TCATCAAATCCCAGCCTGGGGAAGTAGTCAAGCCGGACCAATTCAAGGCC
ATAAATGATGAAGGAATGCCTATGTATCAGAGGCCATTTATGAGGGGCAA
ACTGTACATTCATTTCACTGTTTGACTTCCCTGAGTCACTGAGCCCAGAC
CAGTGCAAGATGCTGGAGACCGTACTACCTCCAAGGACCTCAGTCCAGCT
CACCGATATGGAACTGGATGAGTGTGAAGAAACAACCCTGCATGATGTGA
ACATTGAGGAGGAAATGCGAAGGAAGCAACAAGCAGCTCAGGAGGCATAC
GATGAAGATGACGATATGCAAGGTGGTGCCCAGAGAGTGCAGTGTGCTCA
GCAGTGATGATGTAGAAGAAAAGGGGTGGCCTGATTTAGTATTTTCATTG
TTTGGGAGAAAAAGATTCTCAACATATTTATTTTCTGTTATAGGCTTTAG
AGGTTCTAGTTTTGGTTTGTCTGTCCTTATTCTTATGTTTTTCTGATAAC
TGACTATGTAATGGAATTCTAGCGTTGCACCTTCAA