DR908825

Overview
NameDR908825
Unique NameDR908825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 1.571e-69
Identity = 136/178 (76.40%), Postives = 142/178 (79.78%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGS 573
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR            EG+E +A A EE KKS+HV RKLEKR++ RTLDPHIEEQFGS
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEA-AAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGS 177          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.330e-68
Identity = 136/178 (76.40%), Postives = 143/178 (80.34%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGS 573
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR            EG++ +A  TEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGS
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR-KKKAPAAKKDAEGQDAEA-TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGS 176          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.625e-66
Identity = 134/177 (75.71%), Postives = 140/177 (79.10%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFG 570
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR              EEG+A  TEEAKKS+HV  KLEKRQ+ RTLD HIEEQFG
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTP--EEGEA-TTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFG 174          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.288e-63
Identity = 128/178 (71.91%), Postives = 136/178 (76.40%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGS 573
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR              ++G+A  TEE KKS+HV RKLE RQ+ R LD H+EEQF S
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRK-------------KKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSS 165          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.288e-63
Identity = 124/179 (69.27%), Postives = 136/179 (75.98%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR-XXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGS 573
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR             EGEE    A EE KKS+H+LRK+  RQ+ R+LD HIE+QF S
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFAS 179          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.877e-41
Identity = 91/180 (50.56%), Postives = 113/180 (62.78%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSN---KTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFG 570
            MGISRD++H                 YELGRQ A TK+ S    K VR IRVRGG+ K+RALRLDTGN+SW +E +TRK RIL+VVYNA++N+LVRT TLVK +IVQ+DA P+KQWY  HYGV +G+            +  + D  A +  KKS+ +L KL  R K R LD  IE Q G
Sbjct:    1 MGISRDALHKHRLTGAARKCNYKKRKYELGRQAAKTKICSQGEEKRVRSIRVRGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATPYKQWYETHYGVVVGK-----------KKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIG 169          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 3.413e-40
Identity = 88/176 (50.00%), Postives = 111/176 (63.07%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQF 567
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR              EE D       K+S  V +K +KR+K+  + P ++EQF
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGRKKGAKLTP------EEED---ILNKKRSKKVQKKFDKRRKNSKISPLLDEQF 166          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.116e-38
Identity = 85/178 (47.75%), Postives = 111/178 (62.36%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGS 573
            MGISRDS H                 +ELGR  ANTK+ +++ VR +R RGGN K+RALRLD+GN+SW SE  TRKTRI+D +YNA+NNELVRT+TLVK AI+ VDAAPF+QWY  HY + + R              EE +A   +  K+S H ++K  +RQK   +D  + EQF +
Sbjct:    1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHR-VRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKL-------SEEDNAILNK--KRSHHTMKKYTERQKTAAVDALLIEQFNT 168          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.214e-37
Identity = 92/179 (51.40%), Postives = 111/179 (62.01%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDR-TLDPHIEEQFGS 573
            MGISRDS H                 YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL+VVYNASNNELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+              + GD    EE+K S     K EKR + R  LD  I+E F S
Sbjct:    1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGKK-------------KAGD----EESKFSKRHAGKQEKRCQTRLPLDEGIKELFQS 161          
BLAST of DR908825 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.214e-37
Identity = 86/179 (48.04%), Postives = 106/179 (59.22%), Query Frame = 1
Query:   40 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIEEQF 567
            MGISRD+ H                 YELGR  ANTK+   + +  IRVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ +V VD+ P++QWY  HY + +GR                   P  EE    K+S  V +K   R+K   + P +EEQF
Sbjct:    1 MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRR-IHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQF 166          
The following BLAST results are available for this feature:
BLAST of DR908825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE1.571e-6976.4040S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ1.330e-6876.4040S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR1.625e-6675.7140S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH1.288e-6371.9140S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH1.288e-6369.2740S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_DICDI6.877e-4150.5640S ribosomal protein S8 OS=Dictyostelium discoide... [more]
RS8_ICTPU3.413e-4050.0040S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_CAEEL7.116e-3847.7540S ribosomal protein S8 OS=Caenorhabditis elegans... [more]
RS8_GRIJA1.214e-3751.4040S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_DANRE1.214e-3748.0440S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16953 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-21_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908825 ID=DR908825; Name=DR908825; organism=Citrus sinensis; type=EST; length=574bp
CCACGGACAGAGAAACCCTAAGAATTTCTCTCTGCGAAAATGGGTATTTC
CCGTGATTCCATGCACAAGAGGCGTGCTACTGGGGGCAAGAAGAAGGCTT
GGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTGCAAATACTAAG
CTATCAAGCAACAAGACAGTGAGGAGGATTAGGGTTCGTGGAGGTAATGT
GAAATGGCGTGCTTTGAGGCTTGACACAGGAAACTACTCCTGGGGAAGCG
AAGCAGTGACTCGTAAGACCAGAATTCTGGATGTGGTATACAATGCCTCC
AATAATGAGCTGGTCCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCA
GGTTGATGCAGCACCATTCAAGCAGTGGTATCTCCAGCATTATGGTGTTG
ACATTGGTCGCAAGAAGAAGGCTGCAGCTGCTGCCACAACCAAGAAAGAA
GGAGAGGAAGGAGACGCTCCTGCCACTGAGGAGGCAAAGAAGAGCAGCCA
TGTCTTGAGAAAGCTTGAGAAGCGTCAAAAAGATCGCACACTTGACCCAC
ATATTGAGGAGCAGTTTGGTAGTG
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