DR908824

Overview
NameDR908824
Unique NameDR908824
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908824 vs. ExPASy Swiss-Prot
Match: SYA_ARATH (Alanyl-tRNA synthetase, mitochondrial OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3)

HSP 1 Score: 233.802 bits (595), Expect = 4.581e-61
Identity = 122/184 (66.30%), Postives = 148/184 (80.43%), Query Frame = 1 
Query:    1 ASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKSVKVATEMAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVICAGVPEKSDQSKQLEVSEWLTAALQPLXXXXXXXXXXXXXXXXTDAAQVTPAMDLAAEFAAMKL 552
            AS+ EGS LEK V++LKS+VD A IPA KKADIR KIA LQN+VRKAQKK+AE+NL+KSVK+ATE AE+AAS+GK FCI +++VGLDAAAVREAV KV+E+KGM +MVFSTDE+TNKAV+CAGVPEKSDQ K L+V+EWLT AL PL                TDA+QV  A+D+A+ FA+MKL
Sbjct:  819 ASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFASMKL 1002
The following BLAST results are available for this feature:
BLAST of DR908824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYA_ARATH4.581e-6166.30Alanyl-tRNA synthetase, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16952 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908824 ID=DR908824; Name=DR908824; organism=Citrus sinensis; type=EST; length=574bp
GCATCAAAAATAGAAGGAAGCTTGCTGGAAAAGACAGTGGCTTCTTTAAA
GAGTAAAGTGGATGGAGCAGCAATTCCAGCACCCAAGAAAGCTGATATCA
GGGCTAAGATTGCGTTACTTCAGAATCAAGTGAGGAAGGCGCAAAAGAAG
GTTGCTGAAGAAAATCTTCAGAAATCTGTCAAGGTTGCAACTGAGATGGC
TGAAGCTGCTGCTTCAAATGGAAAACCCTTCTGCATCTCTCGTGTTGAGG
TTGGATTGGATGCAGCTGCAGTTCGTGAGGCAGTTCTGAAAGTCATAGAG
CAGAAGGGCATGCCGGTCATGGTCTTCAGTACCGATGAAACCACAAATAA
GGCTGTCATATGTGCAGGTGTACCAGAGAAATCAGACCAGAGCAAACAGT
TGGAGGTGTCAGAGTGGTTGACAGCAGCTTTGCAACCACTGAAAGGGAGG
TGTGGTAAAGGTAAAGGAGGTCTTGCTTCTGGACAGGGAACAGATGCGGC
CCAAGTGACCCCGGCCATGGATTTGGCAGCAGAATTTGCGGCAATGAAAT
TGAGGTGACCAAAGGATTTTTAAG
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