DR908817

Overview
NameDR908817
Unique NameDR908817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHTL8_ARATH (Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 4.894e-63
Identity = 114/152 (75.00%), Postives = 121/152 (79.61%), Query Frame = 1
Query:    1 ALFQFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFFKP 456
            AL+ FH HDI RGLLA  FLLVVF+CLSSFQIYSMP FDSFEA YTSRTN+PCSIWVRSGFRVF+GFVSFFIGV                     AYPCFMWVLIKKP KYSFNWYF+W LGWLGVAFSLAFSIGGIWS+V +GLKLKFFKP
Sbjct:  366 ALYAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517          
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHTL7_ARATH (Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 47/149 (31.54%), Postives = 68/149 (45.64%), Query Frame = 1
Query:   10 QFHSHDISRGLLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAYPCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFFKP 456
            + ++ + S+       L  +F+CL S+ I  MP  D+ E  Y ++  +P SI VR   RVF   V F I V                      YPCFMW+ IKKP + S  W FN ++G LG + S+   +     +   GL   FF+P
Sbjct:  308 KLYTQEHSKRAACFIHLTFIFSCLCSYPINLMPACDNIEMVYITKKKKPASIIVRMMLRVFLSLVCFTIAVGFPFLPYLAVLIGAIALLVTFTYPCFMWISIKKPQRKSPMWLFNVLVGCLGASLSVLLLVASAMRLAQKGLHANFFRP 456          
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 43/137 (31.39%), Postives = 64/137 (46.72%), Query Frame = 1
Query:   43 LAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAY-PCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFF 450
            +A   L VV + + S+QI++MPVFD  E     + N   S  +R   R  Y  ++ FIG+                      + PC MW+LI KP ++S +W+ NW+   LGV   +  SIGG+  I+       FF
Sbjct:  316 IATANLFVVMHVIGSYQIFAMPVFDMVETFLVKKLNFKPSTVLRFIVRNVYVALTMFIGIMIPFFGGLLAFFGGFAFAPTSYFLPCIMWLLIYKPKRFSLSWWTNWVCIVLGVVLMILSSIGGLRQIIIQSKDYSFF 452          
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 42/138 (30.43%), Postives = 62/138 (44.93%), Query Frame = 1
Query:   40 LLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAY-PCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFF 450
            L+A+    VV + + S+QIY+MPVFD  E     +     S  +R   R  Y   + F+ +                      Y PC MW+ IKKP KY  +W  NW    +GV  ++   IGG+ +I+ S    +FF
Sbjct:  303 LIAIANAFVVVHVIGSYQIYAMPVFDMLETFLVKKMMFAPSFKLRFITRTLYVAFTMFVAICIPFFGGLLGFFGGFAFAPTTYYLPCIMWLCIKKPKKYGLSWCINWFCIVVGVILTILAPIGGLRTIIISAKNYEFF 440          
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.765e-12
Identity = 41/138 (29.71%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   40 LLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAY-PCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFF 450
            L+A   L+VV + + S+Q+++MPVFD  E    ++      + +R   R  Y   + FIGV                      + P  MW++IKKP ++S  W+ NWI   +GV   LA +IGG+ +I+       F+
Sbjct:  302 LIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLLGFFGGFGFAPTSFFLPSIMWLIIKKPRRFSVTWFVNWISIIVGVFIMLASTIGGLRNIIADSSTYSFY 439          
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 41/138 (29.71%), Postives = 64/138 (46.38%), Query Frame = 1
Query:   40 LLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAY-PCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFF 450
            L+A   + VV + + S+QIY+MPVFD  E     + N   +  +R   R FY   + F+G+                      + PC +W+ I KP KYS +W+ NW+    G+   +   IGG+ +IV      KF+
Sbjct:  308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSPIGGLRTIVIQAKGYKFY 445          
BLAST of DR908817 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.952e-11
Identity = 38/138 (27.54%), Postives = 64/138 (46.38%), Query Frame = 1
Query:   40 LLAVTFLLVVFNCLSSFQIYSMPVFDSFEASYTSRTNRPCSIWVRSGFRVFYGFVSFFIGVXXXXXXXXXXXXXXXXXXXXXAY-PCFMWVLIKKPTKYSFNWYFNWILGWLGVAFSLAFSIGGIWSIVNSGLKLKFF 450
            L+A+  + VV + + S+QI++MPVFD  E     + N   S  +R   R  Y   +  + +                      Y PC MW+++KKP ++  +W  NW    +GV  ++   IGG+ +I+ +    KFF
Sbjct:  303 LIAMANMFVVIHVIGSYQIFAMPVFDMLETVLVKKMNFNPSFKLRFITRSLYVAFTMIVAICVPFFGGLLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWTANWFCIIVGVLLTILAPIGGLRTIIINAKTYKFF 440          
The following BLAST results are available for this feature:
BLAST of DR908817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LHTL8_ARATH4.894e-6375.00Lysine histidine transporter-like 8 OS=Arabidopsis... [more]
LHTL7_ARATH1.395e-1731.54Lysine histidine transporter-like 7 OS=Arabidopsis... [more]
LHTL1_ARATH3.557e-1331.39Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHTL2_ARATH7.923e-1330.43Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL6_ARATH1.765e-1229.71Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHT1_ARATH2.305e-1229.71Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHT2_ARATH1.952e-1127.54Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16945 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-23_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908817 ID=DR908817; Name=DR908817; organism=Citrus sinensis; type=EST; length=575bp
GCATTGTTTCAATTTCACAGCCACGATATATCGAGAGGACTTCTCGCAGT
GACTTTTCTCCTTGTTGTATTCAACTGTTTAAGTAGCTTTCAAATATACT
CGATGCCTGTTTTCGACAGCTTTGAAGCAAGCTACACCAGCCGCACCAAC
CGACCGTGCTCAATCTGGGTTCGATCTGGTTTCCGGGTTTTCTATGGATT
TGTCTCATTCTTCATAGGCGTGGCACTCCCTTTCCTCTCCAGCCTTGCCG
GTCTCTTGGGAGGACTCACTCTTCCGGTCACTTTTGCTTATCCATGCTTC
ATGTGGGTGCTAATAAAAAAGCCTACGAAATACAGCTTCAACTGGTATTT
CAATTGGATCCTGGGTTGGTTGGGAGTCGCCTTTAGCCTGGCCTTCTCCA
TTGGCGGTATTTGGAGTATAGTGAACAGTGGACTTAAGTTGAAATTCTTC
AAGCCCAGTTGACAAACAGTCAGTAGTACTAGCTAAAGGGAATGTCGAAA
CTCTGTAAAATCAATGGAGATTCATTTCGATTTGGTGGTGGTTCGTACAA
TTTTAAACTTCCATGTATGCACATG
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