DR908811

Overview
NameDR908811
Unique NameDR908811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio GN=vps29 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 2.779e-58
Identity = 101/159 (63.52%), Postives = 130/159 (81.76%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHTH+F+A+++E    INPGSATGAYS+   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii GN=VPS29 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.191e-58
Identity = 100/159 (62.89%), Postives = 129/159 (81.13%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus GN=Vps29 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.191e-58
Identity = 100/159 (62.89%), Postives = 129/159 (81.13%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_HUMAN (Vacuolar protein sorting-associated protein 29 OS=Homo sapiens GN=VPS29 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.191e-58
Identity = 100/159 (62.89%), Postives = 129/159 (81.13%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_BOVIN (Vacuolar protein sorting-associated protein 29 OS=Bos taurus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 6.191e-58
Identity = 100/159 (62.89%), Postives = 129/159 (81.13%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   23 PAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 181
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus GN=Vps29 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 8.086e-58
Identity = 100/159 (62.89%), Postives = 128/159 (80.50%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE +DYLK+L  D+H+ RG++DE   YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_CHICK (Vacuolar protein sorting-associated protein 29 OS=Gallus gallus GN=VPS29 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.379e-57
Identity = 100/159 (62.89%), Postives = 128/159 (80.50%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  K+ +DYLK+L  D+HV RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQ DVDIL++GHTH+F+A++HE    INPGSATGAY +   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   23 PAKFKKLLVPGKIQHILCTGNLCTKDTYDYLKTLAGDVHVVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYHALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 181
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_XENTR (Vacuolar protein sorting-associated protein 29 OS=Xenopus tropicalis GN=vps29 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.241e-57
Identity = 100/159 (62.89%), Postives = 128/159 (80.50%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_XENLA (Vacuolar protein sorting-associated protein 29 OS=Xenopus laevis GN=vps29 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.241e-57
Identity = 100/159 (62.89%), Postives = 128/159 (80.50%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P KFK +LVPGKIQHI+CTGNL  KE  DYLK+L  D+H+ RG++DE+  YPE K +T+GQFK+G+ HGHQVIPWGD+ SLA+LQRQLDVDIL++GHT +F+A++HE    INPGSATGAY++   ++ PSFVLMDI    VV YVY+LI  +VKV++I
Sbjct:   19 PAKFKKLLVPGKIQHILCTGNLCTKESFDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTQKFEAFEHENKFYINPGSATGAYNALENNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERI 177
[Close]
BLAST of DR908811 vs. ExPASy Swiss-Prot
Match: VPS29_DICDI (Vacuolar protein sorting-associated protein 29 OS=Dictyostelium discoideum GN=vps29 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.525e-56
Identity = 95/159 (59.75%), Postives = 127/159 (79.87%), Query Frame = 2 
Query:    2 PQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKI 478
            P +FK +LVP KIQHI+CTGNL  KE+HDY K L  D+H+ RG+ DE++ YP+TK ++IGQFK G+CHGHQ++PWGD  SLA LQRQLDVD+L++GHTH  + ++  G + +NPGSATGA+S+ + DV PSFVLMD+    + VY+Y+LIDG+VKV+KI
Sbjct:   19 PPEFKKLLVPEKIQHILCTGNLVSKEIHDYFKVLTSDVHIVRGDLDENTSYPDTKIVSIGQFKFGLCHGHQIVPWGDRASLAALQRQLDVDVLISGHTHVLEVFESNGKLFVNPGSATGAFSNISNDVIPSFVLMDVQSNNITVYIYKLIDGQVKVEKI 177
The following BLAST results are available for this feature:
BLAST of DR908811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_DANRE2.779e-5863.52Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_PONAB6.191e-5862.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_MOUSE6.191e-5862.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_HUMAN6.191e-5862.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_BOVIN6.191e-5862.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_RAT8.086e-5862.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_CHICK1.379e-5762.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENTR5.241e-5762.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_XENLA5.241e-5762.89Vacuolar protein sorting-associated protein 29 OS=... [more]
VPS29_DICDI1.525e-5659.75Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16939 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-29_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908811 ID=DR908811; Name=DR908811; organism=Citrus sinensis; type=EST; length=576bp
GCCCCAAAAGTTCAAATCTATGCTCGTTCCTGGAAAAATTCAGCACATCA
TTTGTACTGGCAATCTCTCTATCAAAGAAGTCCATGATTATTTGAAGAGT
CTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGAAGATTCACG
TTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGCTTGGAATCT
GCCATGGTCATCAGGTTATTCCATGGGGGGACTTGGATTCGCTGGCAATG
CTGCAAAGGCAGTTGGATGTGGACATCCTTGTGACTGGTCATACCCATCA
GTTCAAAGCCTACAAACATGAAGGTGGTGTTGTTATAAATCCTGGCTCTG
CAACTGGTGCCTACAGTAGCTTTACATTTGATGTAAACCCAAGCTTTGTA
CTCATGGACATTGATGGTCTGCGAGTTGTGGTTTATGTATACGAATTAAT
TGACGGTGAAGTAAAGGTTGACAAAATTTGATTTTAAGAAGACTGCCACT
ACTCGATTAGCACACTGATTCAGCACACTGCATCCTTGACTTTGTTGGAC
TAATTGCTGAGAACTTTTATGTAATG
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