CN189627

Overview
NameCN189627
Unique NameCN189627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ANL2_ARATH (Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.579e-40
Identity = 91/124 (73.39%), Postives = 98/124 (79.03%), Query Frame = -2
Query:  405 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 776
            SMLILQETC DA+G+LVVYAPVDIPAMHVVMNGGDS+YVALLPSGFA++PDG    G                     SLLTVAFQILVN+LPTAKLTVESVETVNNLISCTVQKI+AALQCES
Sbjct:  687 SMLILQETCIDASGALVVYAPVDIPAMHVVMNGGDSSYVALLPSGFAVLPDGGIDGG--------GSGDGDQRPVGGGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAALQCES 802          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC5_ORYSJ (Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.930e-38
Identity = 86/124 (69.35%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  405 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 776
            SMLILQETCTDA+GS+VVYAPVDIPAM +VMNGGDS YVALLPSGFAI+PDGP                         SLLTVAFQILVN+ PTAKLTVESVETVNNLISCT++KIK ALQC++
Sbjct:  695 SMLILQETCTDASGSIVVYAPVDIPAMQLVMNGGDSTYVALLPSGFAILPDGP--------------RIGATGYETGGSLLTVAFQILVNNQPTAKLTVESVETVNNLISCTIKKIKTALQCDA 804          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: HDG1_ARATH (Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.634e-37
Identity = 89/124 (71.77%), Postives = 94/124 (75.81%), Query Frame = -2
Query:  405 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 776
            SMLILQET  DAAG++VVYAPVDIPAM  VMNGGDSAYVALLPSGFAI+P+G       A                  SLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL C+S
Sbjct:  685 SMLILQETSIDAAGAVVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAILPNGQAGTQRCA-AEERNSIGNGGCMEEGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCDS 807          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC6_ORYSJ (Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.997e-35
Identity = 81/127 (63.78%), Postives = 96/127 (75.59%), Query Frame = -2
Query:  414 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG------PDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 776
            +MLILQETCTD++GSLVVYAPVD+ +MHVVMNGGDSAYV+LLPSGFAI+PDG      P      +                  SL+TVAFQILVN+LPTAKLTVESV+TV+NL+SCT+QKIK+ALQ
Sbjct:  740 NMLILQETCTDSSGSLVVYAPVDVQSMHVVMNGGDSAYVSLLPSGFAILPDGHNNGASPSPAEVGSGASPNSAAGGGGGSNNTGSLVTVAFQILVNNLPTAKLTVESVDTVSNLLSCTIQKIKSALQ 866          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC4_ORYSJ (Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.295e-34
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = -2
Query:  408 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCE 776
            SMLILQETC DA+GS+VVYAPVDIPAMH+VM+GGDS+ VALLPSGFAI+P GP                         SLLTVAFQIL NS P+AKLTVESVETV+NLISCT++KIK AL C+
Sbjct:  705 SMLILQETCADASGSMVVYAPVDIPAMHLVMSGGDSSCVALLPSGFAILPAGPS---------------IGADHKMGGSLLTVAFQILANSQPSAKLTVESVETVSNLISCTIKKIKTALHCD 812          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: HDG7_ARATH (Homeobox-leucine zipper protein HDG7 OS=Arabidopsis thaliana GN=HDG7 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.103e-33
Identity = 77/121 (63.64%), Postives = 88/121 (72.73%), Query Frame = -2
Query:  414 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 776
            SMLILQET  D +G+LVVYAPVDIP+M+ VM+GGDSAYVALLPSGF+I+PDG  S                        LLTV FQILVNSLPTAKL VESVETVNNLI+CT+ KI+AAL+
Sbjct:  564 SMLILQETWNDVSGALVVYAPVDIPSMNTVMSGGDSAYVALLPSGFSILPDGSSSSS-----DQFDTDGGLVNQESKGCLLTVGFQILVNSLPTAKLNVESVETVNNLIACTIHKIRAALR 679          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 78/130 (60.00%), Postives = 93/130 (71.54%), Query Frame = -2
Query:  387 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*YDNGV 776
            +MLILQE CTDA GS V+YAPVD+ AM+VV+NGGD  YVALLPSGFAI+PDGPD  G                     SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+      DNGV
Sbjct:  638 NMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGG--------------------GSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAIT----GDNGV 743          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSI (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.013e-32
Identity = 78/130 (60.00%), Postives = 93/130 (71.54%), Query Frame = -2
Query:  387 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES*YDNGV 776
            +MLILQE CTDA GS V+YAPVD+ AM+VV+NGGD  YVALLPSGFAI+PDGPD  G                     SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+      DNGV
Sbjct:  638 NMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGG--------------------GSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAIT----GDNGV 743          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.750e-31
Identity = 75/124 (60.48%), Postives = 92/124 (74.19%), Query Frame = -2
Query:  405 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 776
            +MLILQE+CTDA+GS V+YAPVD+ AM+VV+NGGD  YVALLPSGFAI+PDGP   G                     SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+  ES
Sbjct:  666 NMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDG--------GDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGES 781          
BLAST of CN189627 vs. ExPASy Swiss-Prot
Match: ROC1_ORYSJ (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.750e-31
Identity = 75/120 (62.50%), Postives = 90/120 (75.00%), Query Frame = -2
Query:  417 SMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXXXXXXXXXSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL 776
            +MLILQE+CTDA+GS VVYAPVDI AM+VV+NGGD  YVALLPSGFAI+PDGP      A                  SLLTVAFQILV+S+PTAKL++ SV TVN+LI+CTV++IKAA+
Sbjct:  665 NMLILQESCTDASGSYVVYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGPSGNAQAA-------VGENGSGSGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAV 777          
The following BLAST results are available for this feature:
BLAST of CN189627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ANL2_ARATH1.579e-4073.39Homeobox-leucine zipper protein ANTHOCYANINLESS 2 ... [more]
ROC5_ORYSJ1.930e-3869.35Homeobox-leucine zipper protein ROC5 OS=Oryza sati... [more]
HDG1_ARATH1.634e-3771.77Homeobox-leucine zipper protein HDG1 OS=Arabidopsi... [more]
ROC6_ORYSJ1.997e-3563.78Homeobox-leucine zipper protein ROC6 OS=Oryza sati... [more]
ROC4_ORYSJ1.295e-3465.04Homeobox-leucine zipper protein ROC4 OS=Oryza sati... [more]
HDG7_ARATH7.103e-3363.64Homeobox-leucine zipper protein HDG7 OS=Arabidopsi... [more]
ROC7_ORYSJ6.013e-3260.00Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC7_ORYSI6.013e-3260.00Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC2_ORYSJ1.750e-3160.48Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]
ROC1_ORYSJ1.750e-3162.50Homeobox-leucine zipper protein ROC1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189627 ID=CN189627; Name=CN189627; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTTTTTTGCACAAAGGAATACTTCAAACTTCACTTTCTAG
TTTTGGTTTTTTTGACAATTCATAAAGGGGGTTGACCCTGAGTCAATACC
NCGAACCACCACCCCTTGCCTTGTGTTAAGAATAGTCTCTGCTCGAGTCC
GTGACTCAGCCCCATCCTCATCACCATGCAAGGAGTTTCCACGCGCGGTT
CGTTCTTGACTCAACACCCCCGAAGCAAAGCAAACACACTGTCACACGCG
CCCACGTACCAAAGCTGTCTCTCTCTCTCTCTCTCTCTGTTCACCACAAT
TCACAAGCCACGTGATTAGCTACAATTAACCGTAGCCATGCACAAAGCAA
AACACCCCATCGTGTCAAGTTAAAAAACCAAACACCAACTCCATTATCGT
ATCAGCTTTCACATTGAAGAGCGGCCTTGATCTTCTGAACAGTGCATGAT
ATTAGATTGTTGACCGTCTCCACAGATTCTACCGTAAGCTTGGCCGTCGG
AAGACTATTCACCAAGATTTGGAAGGCCACTGTTAAAAGCGAGCCACCCA
CTCTCTGTGACCCACCGTTGCTCCCATTCCCACTTGTGGGGCCATTAGCC
AGGGGCCCTCGTGAGTCTGGACCATCTGGAACAATTGCAAATCCAGAAGG
AAGGAGAGCCACGTAGGCAGAATCACCACCGTTCATCACCACGTGCATGG
CCGGGATGTCAACGGGCGCGTAGACGACAAGCGACCCAGCGGCGTCTGTG
CATGTCTCCTGTAATATCAACATGCTG
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