CN189613

Overview
NameCN189613
Unique NameCN189613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:289..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.479e-54
Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.221e-53
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFETT+YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALL+FTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSK 164
[Close]
BLAST of CN189613 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.594e-53
Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 2 
Query:    2 KADRERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 304
            KA+RERGITIDIALWKFET++YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK
Sbjct:   64 KAERERGITIDIALWKFETSKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164
The following BLAST results are available for this feature:
BLAST of CN189613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_WHEAT5.479e-5498.02Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_TOBAC5.479e-5498.02Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC5.479e-5498.02Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ORYSJ5.479e-5498.02Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MANES5.479e-5498.02Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_MAIZE5.479e-5498.02Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_ARATH5.479e-5498.02Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A2_DAUCA5.479e-5498.02Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_SOYBN1.221e-5397.03Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_VICFA1.594e-5397.03Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002C09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189613 ID=CN189613; Name=CN189613; organism=Citrus sinensis; type=EST; length=306bp
CAAGGCTGATCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGT
TCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCTGGACATCGT
GACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGT
CCTTATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGG
ATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAG
CAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCCCAAGTACTC
AAAGGC
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