CX044506

Overview
NameCX044506
Unique NameCX044506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044506 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.967e-19
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  354 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSN---------------KQAQPDPNQWNAGY 635
            DPNNTTVF+G L S+VT++ LR  F  +G +V+VKIP GK CGFVQ+ DR  AE A+  + G  +    +RLSWGRS                  +Q QP   Q N GY
Sbjct:  309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQPGLQQPNYGY 417          
BLAST of CX044506 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  372 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPN 635
            D  N+TVFVG L   V++E L+ LF  +G++V+VKIP GK CGFVQF +R  AE A+  L G  LG   IRLSWGR+  N  A P  N
Sbjct:  299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN-QNPIAAPALN 385          
BLAST of CX044506 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = -3
Query:  336 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRSPSNKQAQPDPNQWNAGYYGYAQG 635
            DP NTTVFVG L    T+  LR LF  +G +++V+IP GK CGFV+F  R  AE +++ L G  +GG  IRLSWGR PS+  A+ +     A  Y  + G
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR-PSSSNAKTNSTIMGASQYMSSNG 454          
BLAST of CX044506 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = -3
Query:  405 DPNNTTVFVGNLDSIVTDEHLRELFSQYGQLVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTQLGGQNIRLSWGRS 635
            DP NTTVFVG L S ++++ L+  F  +G+++++KIP GK CGFVQ++++S AE+A+  + G  +G  +IRL+WG +
Sbjct:  293 DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
The following BLAST results are available for this feature:
BLAST of CX044506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NAM8_YEAST1.967e-1944.95Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
YG41_SCHPO8.264e-1852.27Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NGR1_YEAST1.559e-1646.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
CSX1_SCHPO2.939e-1545.45RNA-binding post-transcriptional regulator csx1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_18A04_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-18A04-B8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044506 ID=CX044506; Name=CX044506; organism=Citrus sinensis; type=EST; length=658bp
GTAAAAAGCATTTAAATAACAATAAGTAGTACTCACAAAAATTTTATGAG
AATGAACGTTCATACAACACATAGCGATATTAAGAAAAAGATAAGGGTAC
AGAGCCTGAACTGGTTTCCTCCAGAGAGGACAGGAAGAAAGATCATTGTA
GTAGTATCACACCATTAAGTTACTGCTACAATAAAAAGCAGTCACATAAA
CAAAAACTCCTCATCAATATCCACTTCCTACTGCTGTGGTTGCTGGGGCT
GCTGATAATTTCCATATCCTGGATATCCTCCGTAGTACATGCTAGGGTCT
TGCGGAGCAGCAGCCGCATAACCATAATTCTCATAACCTTGGGCATATCC
ATAGTATCCAGCATTCCACTGGTTTGGGTCTGGCTGAGCCTGTTTGTTTG
AAGGACTACGTCCCCATGATAGCCGGATATTTTGTCCTCCCAACTGAGTT
CCATTTAACATTCTCAATGCTTCCTCTGCACAACTTCTGTCAGCAAATTG
AACAAATCCACATCGCTTGCCTGCTGGTATTTTCACATGTACTAGTTGCC
CATATTGGCTGAACAGTTCTCTCAAATGTTCATCCGTAACAATAGAGTCC
AGATTACCAACAAACACCGTTGTATTATTTGGATCGTCATCACTCTGTGC
CACTTGAG
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