CN189595

Overview
NameCN189595
Unique NameCN189595
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2265 contig Csv1_Contig2265:708..1429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.949e-42
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = -1
Query:  227 LGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSP--SERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 721
            LGL T+ LK+       +++GHYYP CPQPDLT+G+T H+D   LTILLQD  GGLQ+ H + WVDV PVPGALV+N+GD+LQ+++ND++ISVEHRVLAN +  PRIS+A FFS        +YGP  E++S E P  +R  T T+Y   + +K  DG + + Y ++
Sbjct:  200 LGLNTNHLKDMDCTNSLLLLGHYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVA-GPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.494e-39
Identity = 85/171 (49.71%), Postives = 114/171 (66.67%), Query Frame = -1
Query:  227 LGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDS------LYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 721
            LGLK + L+E    EG +++GHYYP CPQP+LT G + H+D G LTIL+QD  GGLQI    +W+DV  +PGALVINI D+LQ+++ND++ SVEHRVLAN    PRIS+AV F    +        LYGP  ELIS E P  +++ T  D+IT  F K+ D  + ++ +RL
Sbjct:  230 LGLKPNHLEEMDCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLAN-KVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRL 399          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.308e-38
Identity = 76/167 (45.51%), Postives = 113/167 (67.66%), Query Frame = -1
Query:  227 LGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDS--LYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 721
            LGL+ + L +    +G +M+ HYYP CP+PDLT+G + H+D   LT+LL D   GLQ++    W DV  V GAL+INIGD+LQ+++ND++IS+EHRVLAN +   R+S+A FF+   R +  +YGP  EL+S E P ++R+ T  DY T F  K LDG + + ++++
Sbjct:  203 LGLEPNHLNDMDCSKGLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYRETTIKDYATYFNAKGLDGTSALLHFKI 369          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.370e-37
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = -1
Query:  227 LGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFF--SPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 721
            LGL    LK+           +YYP CPQP+LT+G   HTD G +TILLQDD GGLQ+ H   WVDV P PG+LV+NIGD LQ++SND+Y+SVEHR ++N+    R+SI  FF  SP +   LYGP  EL+S + P ++R  T  D+ +    + LDG + ++ Y++
Sbjct:  198 LGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGS-RMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  254 LGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFF----SPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDG 721
            LGL  + LK+   L+G  M+ HY+P CP+PDLT G + H+D   LT+LL D+  GLQ+     W DV  VPGAL+INIGD+LQ+++ND++IS++HRVLAN +   R+S+A FF     P+ R  +YGP  EL+S E P ++R+ T  DY T F  K L G
Sbjct:  203 LGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPR--VYGPIKELVSEENPPKYRETTIRDYATYFNGKGLGG 360          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 73/170 (42.94%), Postives = 108/170 (63.53%), Query Frame = -1
Query:  227 LGLKTDRLKEKTFLEGRMMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFF-----SPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 721
            LGL  + LKE    +G  M+ H +P CP+P+ T G   HTD   LTILL D+ GGLQ+ +   W+DV P P AL+ N+GD LQ++SND+++S+EHR+LAN   EPRIS+A FF     SPS R  +YGP  EL+S   P ++R  T ++    +  ++ +G + +++ R+
Sbjct:  193 LGLSPNHLKEMDCAKGLWMLCHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSR--VYGPIKELLSELNPPKYRD-TTSESSNHYVARKPNGNSSLDHLRI 359          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = -1
Query:  227 HYYPYCPQPDLTVGITSHTDPGPLTILLQ-DDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYITRFFTKQLDGKTLVNYYRL 658
            +YYP CPQPD  +G+T H+D   LT+L+Q +D  GLQIK   +WV VKP+P A ++NIGD+L+I++N  Y S+EHR + NS  E R+SIA F +      + GP   L+  +K ARF++ T  +Y    F++ LDGK  ++  R+
Sbjct:  216 NYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEV-GPAKSLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.442e-26
Identity = 68/165 (41.21%), Postives = 96/165 (58.18%), Query Frame = -1
Query:  251 LGLKTDRLKEKTFLEGRMMVG---HYYPYCPQPDLTVGITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELI----SPEKPARFRQFTHTDYITRFFTKQLDGK 721
            LGL+   LK+  +   R   G     YP CP PDL  G+ +HTD G + +L QDDK  GLQ+    EWVDV PV  ++V+N+GD L++++N +Y SVEHRVL+ +  E R+SIA F++P   DS+  P PELI      EK   + +F   DY+  +   +   K
Sbjct:  136 LGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGS-DSVIFPAPELIGKEAEKEKKENYPRFVFEDYMKLYSAVKFQAK 299          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = -1
Query:  284 MMVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 670
            M+  +YYP CP+PDL +G+ +HTD   +TIL+ ++  GLQ+   + W DVK +P AL+I+IGD ++IMSN +Y SV HR   N   + R+S  VF  P   + L GP  +LI+ E PA+F+   + DY+
Sbjct:  202 MLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKD-KTRMSWPVFLEPPP-ELLTGPISKLITDENPAKFKTKKYKDYV 328          
BLAST of CN189595 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = -1
Query:  284 LGLKTDRL-KEKTFLEGRM--MVGHYYPYCPQPDLTVGITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSPEPRISIAVFFSPSERDSLYGPFPELISPEKPARFRQFTHTDYI 721
            LGL+ DRL KE   LE  +  M  +YYP CPQP+L +G+ +HTD   LT +L +   GLQ+ +  +WV  K VP ++V++IGD L+I+SN +Y S+ HR L N   + RIS AVF  P +   +  P PE++S E PA+F   T   +I
Sbjct:  191 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI 338          
The following BLAST results are available for this feature:
BLAST of CN189595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ACCH1_ARATH1.949e-4250.901-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO4.494e-3949.71Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_ARATH1.308e-3845.511-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH3_SOLLC9.370e-3746.711-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH2_ARATH1.036e-3548.131-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH1.266e-3342.94Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
SRG1_ARATH4.661e-2844.14Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
ACCO1_ARATH7.442e-2641.211-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
FLS_PETCR1.403e-2443.41Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
LDOX_ARATH4.083e-2443.62Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189595 ID=CN189595; Name=CN189595; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTTTATTTCTAAGCTGTAGGTGGTTCCAATTTCCAATAAGCATGGC
ACCGTTCTCCTTATCCATTACTAAAGAGAACAGTGAAGCCCAACCTTGCT
ATAATTAGTGAATAGCAATAATATACATACTGTAGTTTCAATGAGACGAA
CACTTGAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAA
CCAGATTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGT
TTTTCCATCTAACTGTTTTGTGAAGAACCTTGTTATATAGTCCGTGTGTG
TGAACTGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAAT
GGTCCATAAAGGCTGTCCCTCTCGCTTGGACTGAAGAAAACAGCAATTGA
GATTCGTGGTTCCGGGGACGAATTAGCCAATACTCTATGCTCTACACTTA
TGTATTCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACC
AGAGCTCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAAT
TTGCAGCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGAT
CAGTATGAGATGTGATCCCCACTGTCAGATCAGGCTGCGGACAGTAGGGA
TAATAATGGCCCACCATCATCCTCCCTTCCAGGAAGGTCTTTTCCTTCAA
CCTATCGGTTTTCAACCCCAA
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