CN189583

Overview
NameCN189583
Unique NameCN189583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2740 contig Csv1_Contig2740:1..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189583 vs. ExPASy Swiss-Prot
Match: IMB_DROME (Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.301e-14
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 2
Query:   26 LPNFLELLTLTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLEL--QIVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF---ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 463
            +   LE    +D   + LR AAY+ L ++++ S + +   ++      I+ RL Q +++  QI +  DR +  DLQ+ LC  LQ +++K    DA      Q +D IM   L +F   A +S  V EEA LA+  L    G +FAKYMP F
Sbjct:  512 ITQLLETTDRSDGAQANLRCAAYQALMDMIKNSPL-DCYLVVQRTTLVILERLNQVMQMETQINNHSDRHQFNDLQSLLCATLQSVLRKVHEQDAP-----QISDAIMTALLTMFNSSAGKSGVVQEEAFLAVSTLVELLGAQFAKYMPAF 656          
BLAST of CN189583 vs. ExPASy Swiss-Prot
Match: IMB1_MOUSE (Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   38 LELLTLTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 463
            LE     D   + LRS+AYE+L E+V+ ++  +    + +    IM RL Q L+++  I S+ DR +  DLQ+ LC  LQ +++K    DA     LQ +D +M   LR+F     S  V E+A++A+  L    G EF KYM  F
Sbjct:  511 LETTDRPDGHQNNLRSSAYESLMEIVK-NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650          
BLAST of CN189583 vs. ExPASy Swiss-Prot
Match: IMB1_HUMAN (Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 52/146 (35.62%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   38 LELLTLTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 463
            LE     D   + LRS+AYE+L E+V+ ++  +    + +    IM RL Q L+++  I S+ DR +  DLQ+ LC  LQ +++K    DA     LQ +D +M   LR+F     S  V E+A++A+  L    G EF KYM  F
Sbjct:  511 LETTDRPDGHQNNLRSSAYESLMEIVK-NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650          
BLAST of CN189583 vs. ExPASy Swiss-Prot
Match: IMB1_SCHPO (Importin subunit beta-1 OS=Schizosaccharomyces pombe GN=kap95 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 2
Query:   44 LLTLTDVGGSK--LRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 463
            LL +TD  G++   R++ YETL  ++  S+      +IA +L  I+ RL  ++++Q  I+  +DR    +LQ++LC VL  II++F     T S      DQIM L L+    A + S VHE+ +LAIGA+  +   +F  Y+P F
Sbjct:  503 LLHVTDQKGNENNSRTSGYETLGTLITFSS-DSVLPMIANVLSIILTRLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPDIRTSS------DQIMNLLLQTMQTAPKQSVVHEDVLLAIGAMMNSLEEQFEVYVPSF 641          
BLAST of CN189583 vs. ExPASy Swiss-Prot
Match: IMB1_RAT (Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.180e-13
Identity = 52/146 (35.62%), Postives = 77/146 (52.74%), Query Frame = 2
Query:   38 LELLTLTDVGGSKLRSAAYETLNEVVRCSNITETSQIIAELLPAIMGRLGQTLELQ--IVSSDDREKQGDLQASLCGVLQVIIQKFSSTDATKSFILQTADQIMVLFLRVF--ACRSSTVHEEAMLAIGALAYATGPEFAKYMPEF 463
            LE     D   + LRS+AYE+L E+V+ ++  +    + +    IM RL Q L+++  I S+ DR +  DLQ+ LC  LQ ++ K    DA     LQ +D +M   LR+F     S  V E+A++A+  L    G EF KYM  F
Sbjct:  510 LETTDRPDGHQNNLRSSAYESLMEIVK-NSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLWKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 649          
The following BLAST results are available for this feature:
BLAST of CN189583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IMB_DROME7.301e-1433.77Importin subunit beta OS=Drosophila melanogaster G... [more]
IMB1_MOUSE2.774e-1335.62Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 P... [more]
IMB1_HUMAN2.774e-1335.62Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 P... [more]
IMB1_SCHPO6.180e-1335.62Importin subunit beta-1 OS=Schizosaccharomyces pom... [more]
IMB1_RAT6.180e-1335.62Importin subunit beta-1 OS=Rattus norvegicus GN=Kp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189583 ID=CN189583; Name=CN189583; organism=Citrus sinensis; type=EST; length=465bp
CTTTCACCTCCCCTAATAAGTATCATTGCCGAACTTCTTAGAGCTGCTGA
CCCTTACTGATGTTGGTGGCTCAAAGCTCAGATCTGCTGCTTATGAAACC
TTGAATGAAGTTGTTAGGTGTTCTAACATTACTGAAACATCTCAAATCAT
AGCAGAACTACTTCCAGCAATCATGGGCAGGTTAGGACAGACTCTTGAAC
TTCAGATTGTGTCATCAGATGATAGAGAAAAGCAAGGAGATTTGCAAGCT
TCTCTTTGTGGTGTTCTGCAGGTCATTATCCAGAAATTTAGTAGTACTGA
TGCCACCAAATCCTTTATCCTCCAGACGGCAGATCAAATTATGGTATTGT
TCCTTAGGGTGTTTGCATGCCGTAGTTCTACAGTGCATGAGGAAGCAATG
CTTGCAATTGGAGCTCTGGCTTATGCCACTGGACCAGAATTTGCGAAGTA
TATGCCTGAGTTCTA
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