CN189580

Overview
NameCN189580
Unique NameCN189580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189580_ssr113 microsatellite CN189580_ssr113:113..124. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2404 contig Csv1_Contig2404:207..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.667e-20
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = -2
Query:  158 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 355
            CP KSSWP LVG  G VA AIIE++NP V A++L EGTPVT+D+R +RVR+WVNK+G V+  PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: BGIA_MOMCH (Glu S.griseus protease inhibitor OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.295e-15
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  158 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 355
            C  K SWP+LVG  G  A A+IE+ENP V A+++  G+PVT D+R DRVRVWV ++G V R P IG
Sbjct:    3 CQGKRSWPQLVGSTGAAAKAVIERENPRVRAVIVRVGSPVTADFRCDRVRVWVTERGIVARPPAIG 68          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.768e-15
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = -2
Query:  161 CPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 355
            CP K++WPELVGK+G +AAA +E+EN  VHAIVL EG+ +T+D+R DRV V VN  G V  VP I
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHI 68          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: HPI_HEVBR (Protease inhibitor HPI OS=Hevea brasiliensis GN=PI1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.432e-14
Identity = 38/69 (55.07%), Postives = 50/69 (72.46%), Query Frame = -2
Query:  158 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 364
            A  CP K+SWPELVG NG++AA II+ EN  V AIV+ EG P+T+D   +RVRV+V++   V +VP IG
Sbjct:    2 ASQCPVKNSWPELVGTNGDIAAGIIQTENANVKAIVVKEGLPITQDLNFNRVRVFVDENRVVTQVPAIG 70          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: ICI1_SOLPE (Wound-induced proteinase inhibitor 1 OS=Solanum peruvianum PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = -2
Query:  161 FLLAFAAKPSLAARHEPCLTDGKELRSEVIVSALKGVVEDGPNLVMSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 505
            FLLAF+ + +L AR E   +DG E     ++  LK    D          C  K  WPEL+G     A  IIEKENP +  I +LL G+PVT+D+R DRVR++VN  G V+++PR+
Sbjct:   12 FLLAFSFE-TLMARKE---SDGPE-----VIKLLKEFESDSR--------CKGKQFWPELIGVPALYAKGIIEKENPSITNIPILLNGSPVTKDFRCDRVRLFVNILGDVVQIPRV 110          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: ATSI_AMACA (Trypsin/subtilisin inhibitor OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = -2
Query:  161 AFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAIVLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 364
            A +CP K  WPELVG+ G  AAAIIE+ENP V +IV  E +  T+D+R DRV V V+  G V+R PR+
Sbjct:    1 ARECPGKQEWPELVGEYGYKAAAIIERENPNVRSIVKHERSGFTKDFRCDRVWVVVDSTGVVVRTPRV 68          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: ICID_SOLTU (Wound-induced proteinase inhibitor 1 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  161 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRI 388
            DGP ++     F+C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT DYR +RVR++ N  G V+++PR+
Sbjct:   28 DGPEVIELQKEFECNGKQRWPELIGVPTKLAKGIIEKENSLITNVQILLNGSPVTMDYRCNRVRLFDNILGDVVQIPRV 106          
BLAST of CN189580 vs. ExPASy Swiss-Prot
Match: ICI1_SOLTU (Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.301e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = -2
Query:  158 DGPNLV--MSAFDCPRKSSWPELVGKNGEVAAAIIEKENPCVHAI-VLLEGTPVTRDYRIDRVRVWVNKKGKVIRVPRIG 388
            DGP ++  +  F C  K  WPEL+G   ++A  IIEKEN  +  + +LL G+PVT D R DRVR++ N  G V+ +P +G
Sbjct:   28 DGPEVIQLLKEFQCKGKLRWPELIGVPTKLAKGIIEKENSLISNVHILLNGSPVTLDIRCDRVRLFDNILGYVVDIPVVG 107          
The following BLAST results are available for this feature:
BLAST of CN189580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ITH5_CUCMA8.667e-2065.15Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
BGIA_MOMCH1.295e-1556.06Glu S.griseus protease inhibitor OS=Momordica char... [more]
ICI_LINUS3.768e-1560.00Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
HPI_HEVBR1.432e-1455.07Protease inhibitor HPI OS=Hevea brasiliensis GN=PI... [more]
ICI1_SOLPE2.068e-1342.24Wound-induced proteinase inhibitor 1 OS=Solanum pe... [more]
ATSI_AMACA6.016e-1354.41Trypsin/subtilisin inhibitor OS=Amaranthus caudatu... [more]
ICID_SOLTU2.286e-1244.30Wound-induced proteinase inhibitor 1 OS=Solanum tu... [more]
ICI1_SOLTU3.301e-1143.75Proteinase inhibitor 1 OS=Solanum tuberosum PE=3 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189580 ID=CN189580; Name=CN189580; organism=Citrus sinensis; type=EST; length=506bp
TTTTTTTTTTTTGTAAGGAACACGATTCATGTATGCTTTGACGAACAACA
TATTCAAGGAGCAAATTAGTCCAAGCATGCATTATCTCATAGCCTACAAC
AACACTTATTTCATTTATTTATTTATTAGTTATGAGATAGTCGATGGAGG
AAATTCAACCAATACGAGGAACCCTAATCACCTTCCCTTTCTTGTTGACC
CAAACACGAACCCTGTCAATCCTATAGTCCCGAGTAACTGGAGTTCCCTC
AAGTAATACGATTGCATGAACACAAGGATTCTCTTTCTCTATAATAGCAG
CAGCAACCTCCCCGTTTTTACCAACCAGCTCTGGCCATGAGCTCTTGCGT
GGACAATCAAATGCAGACATGACTAGGTTTGGTCCATCTTCCACAACTCC
TTTCAATGCAGATACGATGACTTCAGAGCGAAGCTCCTTGCCATCGGTCA
GGCAAGGCTCATGACGAGCGGCCAAAGAGGGTTTTGCGGCGAAGGCCAAG
AGAAAG
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