CN189579

Overview
NameCN189579
Unique NameCN189579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189579 vs. ExPASy Swiss-Prot
Match: WIT1_ARATH (WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 100/225 (44.44%), Postives = 144/225 (64.00%), Query Frame = 1
Query:   10 QSRDQILEIKKPSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQ----ARADGAEVRCKSLAEMNIELNEDLKGSRATSEKVESLERQ 672
            Q  +Q++E+KK S+ FQR  S LD +G+W   + + S  D +F + +AKI +QTA+QQR+ LRMLEKSLA+EM+LEKKL+ESR  E  L+ +L S EQ+++Y EE   DA  R  EA+N+AEV KG SKE+ G+LQI+ FN++GS +RE  L+SKL    +++E KE  +  L  + +       A+ +G +   +   E  I LN +   +   SEKV SLE Q
Sbjct:  172 QLMEQVVEMKKQSSNFQRLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRMLEKSLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTEDAFSRWLEADNAAEVFKGTSKEMSGKLQILQFNLSGSFKREDNLKSKLVDSKERLEAKECALHKLDSSNARLADFLVAQTEGLKESLQEAEEKLILLNTE---NSTLSEKVSSLEEQ 393          
BLAST of CN189579 vs. ExPASy Swiss-Prot
Match: WIT2_ARATH (WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.491e-27
Identity = 75/181 (41.44%), Postives = 112/181 (61.88%), Query Frame = 1
Query:    7 QQSRDQILEIKKPSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAE-QQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSE 546
            +QSR Q+ EI    A+ +RTL  +            G+ E+++ +    K  L+ ++ + ++ LRMLEKSL+RE++LEKKL E +Q EE LK +L   E+     EE +     R  EA+NS+EVL GISKEL+GRLQI+ F++NGS QRE+ L+SKL+    Q+E K+ ++  L   +SE
Sbjct:  132 KQSRGQVSEITLQLAQLRRTLHYIRN----------GTSENEESVELRQKYALKPSDLRHKNALRMLEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLTGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISE 302          
The following BLAST results are available for this feature:
BLAST of CN189579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WIT1_ARATH1.320e-4244.44WPP domain-interacting tail-anchored protein 1 OS=... [more]
WIT2_ARATH3.491e-2741.44WPP domain-interacting tail-anchored protein 2 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189579 ID=CN189579; Name=CN189579; organism=Citrus sinensis; type=EST; length=674bp
GCAGGGCAGCAGTCACGGGATCAAATCTTAGAAATTAAAAAGCCATCTGC
TAAGTTCCAGAGGACCTTGTCAGCTCTAGATAGAGAAGGAAATTGGATCA
GTGACAAGGATACAGGCAGTTTGGAAGATGACCAATTTTTGAATGAGAAT
GCAAAAATAAAATTGCAAACAGCTGAACAGCAAAGACATTTTCTGAGGAT
GCTAGAAAAATCTTTGGCGAGAGAGATGGATCTTGAAAAGAAGTTAACTG
AATCAAGACAAGTTGAAGAAGCGCTGAAATTCAGACTAGGCTCGTTTGAA
CAAGAATTACTCTACACGGAGGAAGAAGCTATGGATGCTTGTGAAAGGCT
TTTTGAGGCAGAGAATTCTGCCGAGGTCCTGAAGGGAATTTCTAAAGAAT
TACTTGGTCGACTTCAGATTGTTCTGTTCAATATGAATGGTTCAGTTCAG
CGAGAAGCTGGGCTGAGATCAAAGCTTGATAGTCTCGTGAAACAGGTGGA
AGTCAAAGAAAGTGTTATTGCGAGTTTGAGAGAAAATTTATCTGAAGCCC
AAGCTAGGGCAGATGGTGCGGAAGTCAGGTGCAAGTCATTAGCTGAGATG
AATATAGAACTTAATGAGGATCTTAAAGGTAGCAGAGCTACCTCTGAGAA
GGTGGAATCTCTTGAGAGGCAGCT
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