DR908776

Overview
NameDR908776
Unique NameDR908776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908776 vs. ExPASy Swiss-Prot
Match: YOCS_BACSU (Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 61/187 (32.62%), Postives = 94/187 (50.27%), Query Frame = 1 
Query:    4 MTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE*RQ 564
            +T++ST  A  VTPLL +L   + LPV    +  SILQ V+ PI AGL++  FF +        LP +SV+     V A ++ N E+++   G          +   ++ G++   L   +       Q+ ++ E GMQ+S L  ALA   F  PL +VP AI +V  +L G  L   W+KK + +Q
Sbjct:  131 VTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQVAKAVHALPLVSVIGIVAIVSAVVSGNRENLLQS-GLLIFSVVILHNGIGYLLGFLCAKLLKMDYPS----QKAIAIEVGMQNSGLGAALATAHF-SPLSAVPSAIFSVWHNLSGSMLATYWSKKVKKKQ 311
The following BLAST results are available for this feature:
BLAST of DR908776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YOCS_BACSU3.337e-1432.62Uncharacterized sodium-dependent transporter yocS ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16904 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908776 ID=DR908776; Name=DR908776; organism=Citrus sinensis; type=EST; length=582bp
GTGATGACATCATTGTCTACCGCTACTGCAGTTTTTGTTACGCCACTCTT
ATCACTCTTGCTTATTGGAAAGAGACTGCCTGTTGATGTAAAAGGAATGG
TGTCCAGCATTTTGCAGATTGTAGTTGTGCCAATTGCTGCAGGTTTGCTT
TTGAATCGGTTTTTCCCCCGCATTTGTAATGCTATTCGGCCATTCTTGCC
TCCACTTTCAGTACTTGTGACAGCTTGCTGTGTTGGAGCACCGCTTGCCA
TTAACATTGAGTCTGTTATGTCCCCTTTTGGACTCACTATTTTGTTGCTC
ATTATTACATTTCACTTGTCAGCATTTGTTGCTGGTTATGTCGTTACTGG
TTTGGCCTTCGCTGAGGCACATGATGTGAAAGCACTGCAAAGAACCCTAT
CCTATGAGACAGGAATGCAGAGCAGTCTCCTGGCCCTTGCATTAGCTAAT
AGATTTTTCCAAGATCCTCTAGTGAGTGTGCCGCCAGCTATCTCTACAGT
AATCATGTCATTGATGGGCTTCTTCCTTGTCATGCTTTGGGCGAAGAAGA
GTGAATAAAGGCAAAACAAAGTATTGCAACTG
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