DR908772

Overview
NameDR908772
Unique NameDR908772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.339e-30
Identity = 81/198 (40.91%), Postives = 116/198 (58.59%), Query Frame = 1
Query:    1 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFA----YSEGIRFDKIN-DESAYNSFGAYGQSKLANIL 579
            +STA E+ QG D +G   I+TGA+SGIG ETA+  AL G +VI+A RNM+ G D  + I++E   AKV+AM LD++SL SV+ FA  + S+  PL+IL+ NA I  S + L++D +E  F  N            D +++     S   R+V VSSE+HRF      S  + F  ++  +  Y +  AY +SKL NIL
Sbjct:  110 NSTAMEILQGRDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRR-----SSPARVVVVSSESHRFTEIKDSSGKLDFSLLSPSKKEYWAMLAYNRSKLCNIL 302          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.673e-29
Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG----IRFDKIN-DESAYNSFGAYGQSKLANIL 579
            S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +    I++E   AKV+AM LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E  F  N            D + ++A       R++ VSSE+HRF         + F +++  ++ Y +  AY +SKL NIL
Sbjct:  110 STTAMEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESHRFTDINDSLGKLDFSRLSPTKNDYWAMLAYNRSKLCNIL 302          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.823e-28
Identity = 76/198 (38.38%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    1 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEG----IRFDKIN-DESAYNSFGAYGQSKLANIL 579
            S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RNMA   +    I++E   AKV+A+ LD++ L SV+ FA  + ++  PL++L+ NA   A P+ L+KD +E  F  N            D + ++A       R++ VSSE+HRF         + F +++  ++ Y +  AY +SKL N+L
Sbjct:  110 STTALEILQGRDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESHRFTDINDSLGKLDFSRLSPTKNDYWAMLAYNRSKLCNVL 302          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.182e-27
Identity = 77/198 (38.89%), Postives = 112/198 (56.57%), Query Frame = 1
Query:    1 SSTAEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFA----YSEGIRFDKIN-DESAYNSFGAYGQSKLANIL 579
            S+TA E+ QG D TG   +VTGA+SGIG ETA+  AL G HVI+A RN++   +    I++E   AKV+AM LD++ L SV+ FA  + ++   L++L+ NAG  A P+ L+KD +E  F  N            D + +     S   R++ VSSE+HRF      S  +   +++   S Y +  AY +SKL NIL
Sbjct:  110 STTAMEILQGRDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCR-----SSPARVIVVSSESHRFTDINDSSGKLDLSRLSPPRSDYWAMLAYNRSKLCNIL 302          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.068e-24
Identity = 66/186 (35.48%), Postives = 99/186 (53.23%), Query Frame = 1
Query:   22 TQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            T  +   G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E  F  N            + +K++A       R+VN+SS AH       IRF  +  +  Y S  AYG SKLAN+L
Sbjct:   32 TTNVQIPGKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAHLIG---KIRFHDLQGQKRYCSAFAYGHSKLANLL 209          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.306e-23
Identity = 74/184 (40.22%), Postives = 107/184 (58.15%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNM----AAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDES-AYNSFGAYGQSKLANIL 579
            G T IVTGA++GIG +TA  LA RG ++I+A R+M    AA KD+R     E  +  V+A  LD++SL S+R+FA++   +   ++ILINNAG+M  P   ++D  E+QF  N            D +     K+S   RI+N+SS AH   +   I FD +N ++  YN+  AY QSKLA +L
Sbjct:   38 GKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRG----ETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKL-----KASAPSRIINLSSLAHVAGH---IDFDDLNWQTRKYNTKAAYCQSKLAIVL 209          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: DHRSX_HUMAN (Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 63/176 (35.80%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   52 AIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            AIVTG + GIG  TA+ LA  G+HVI+A  N +  K V   I +E  + KV+ +  D++S+ S+R+F  ++  +  PL++LINNAG+M  P   ++D  E  F  N            DT+K++        R+V VSS  H   Y   +  D +   + Y+   AY QSKLA +L
Sbjct:   46 AIVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESG-SPGHSARVVTVSSATH---YVAELNMDDLQSSACYSPHAAYAQSKLALVL 217          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: YJCD_SCHPO (Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe GN=SPCC736.13 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.762e-23
Identity = 73/186 (39.25%), Postives = 102/186 (54.84%), Query Frame = 1
Query:   34 DGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREG--RIVNVSSEAHRFAYSEGIRFDKIN-DESAYNSFGAYGQSKLANILH 582
            D TG  A+VTG+S GIG  TA  LA +G  V +A RN    + V + I  E+  +K+  + LD+    SV + A  + ++   L+IL+NNAGIM  PF L+KD  ELQ  TN             T+++TA++  R G  RIV+V+S A+  A   GI F  +N       +F  YGQSK A IL+
Sbjct:   39 DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDLLDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTELLLPTLRRTAEE-CRPGDVRIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSKYAQILY 223          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 69/195 (35.38%), Postives = 103/195 (52.82%), Query Frame = 1
Query:   10 AEEVTQGIDGTGLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFA----YSEGIRFDKIN-DESAYNSFGAYGQSKLANIL 579
            A E+  G D +    IVTGA+SGIG ETAR  AL G HVI+A RN +        I+ E   A+V+ + LD++SL SVR+FA  + +   PL++L+ NA + + P+ L++D  E  F               D ++ +A       R+V VSSE+HRF         +  D ++  +  Y S  AY ++KL N+L
Sbjct:  110 ALEILHGQDLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHFLLVQLLQDVLRLSA-----PARVVVVSSESHRFTDLLDSCGNLDLDLLSPPQKNYWSLLAYNRAKLCNLL 299          
BLAST of DR908772 vs. ExPASy Swiss-Prot
Match: RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = 1
Query:   43 GLTAIVTGASSGIGTETARVLALRGVHVIMAVRNMAAGKDVREAIVKEIPSAKVDAMELDVSSLASVRKFASEYNSQGRPLNILINNAGIMASPFMLSKDNIELQFATNXXXXXXXXXXXXDTMKKTAQKSSREGRIVNVSSEAHRFAYSEGIRFDKINDESAYNSFGAYGQSKLANIL 579
            G   ++TGA++GIG ETAR LA RG  V +A R++  G+     I  +  +++V   +LD+S   S+R FA  + ++ + L+ILINNAG+M  P+  + D  E   A N              +K++A       R+VN+SS AH       IRF  +  +  YN   AY  SKLAN+L
Sbjct:   39 GKVVVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTHLLLGRLKESA-----PARVVNLSSVAHHLG---KIRFHDLQGDKYYNLGFAYCHSKLANVL 209          
The following BLAST results are available for this feature:
BLAST of DR908772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
WWOX_CHICK4.339e-3040.91WW domain-containing oxidoreductase OS=Gallus gall... [more]
WWOX_HUMAN3.673e-2939.39WW domain-containing oxidoreductase OS=Homo sapien... [more]
WWOX_PONAB1.823e-2838.38WW domain-containing oxidoreductase OS=Pongo abeli... [more]
WWOX_MOUSE1.182e-2738.89WW domain-containing oxidoreductase OS=Mus musculu... [more]
RDH12_MOUSE6.068e-2435.48Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ... [more]
RDH13_HUMAN2.306e-2340.22Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
DHRSX_HUMAN6.709e-2335.80Dehydrogenase/reductase SDR family member on chrom... [more]
YJCD_SCHPO8.762e-2339.25Uncharacterized oxidoreductase C736.13 OS=Schizosa... [more]
WWOX_DANRE1.495e-2235.38WW domain-containing oxidoreductase OS=Danio rerio... [more]
RDH12_BOVIN1.495e-2235.75Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16900 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-09_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908772 ID=DR908772; Name=DR908772; organism=Citrus sinensis; type=EST; length=582bp
TCCTCAACAGCTGAGGAAGTTACTCAAGGAATTGATGGCACTGGCCTCAC
AGCCATTGTCACAGGAGCATCAAGTGGTATTGGCACTGAAACTGCACGTG
TCCTTGCCTTGCGTGGTGTCCATGTGATTATGGCGGTCAGGAATATGGCT
GCTGGTAAAGATGTTAGAGAGGCAATAGTCAAGGAAATCCCCTCTGCTAA
AGTTGATGCCATGGAGTTGGATGTCAGTTCCTTGGCATCTGTGAGAAAAT
TTGCTTCAGAATATAATAGCCAGGGTCGTCCACTGAATATCCTAATAAAC
AATGCAGGAATAATGGCAAGCCCATTCATGCTATCGAAAGACAACATAGA
ACTACAGTTTGCAACAAATCACTTGGGTCATTTTCTGCTGACTCATCTTT
TATTGGACACCATGAAGAAGACAGCGCAAAAGAGTAGCAGGGAAGGAAGA
ATTGTGAATGTCTCCTCAGAGGCTCATCGTTTTGCTTATAGTGAAGGAAT
TCGTTTTGACAAAATCAATGATGAGTCAGCGTACAACAGTTTTGGTGCGT
ATGGCCAATCGAAGCTTGCCAACATTTTGCAT
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