DR908770

Overview
NameDR908770
Unique NameDR908770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.061e-52
Identity = 99/123 (80.49%), Postives = 114/123 (92.68%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTGDIEATVVACKAADEAVK+IIDAIE+VGGIY++TADHGNAEDMVKR+K G+P + K+GNIQ+LTSHTL+PVPIAIGGPGL   V+FR D+P GGLANVAAT +NLHG+EAPSDYEP+LI
Sbjct:  432 VGHTGDIEATVVACKAADEAVKMIIDAIEQVGGIYVITADHGNAEDMVKRDKKGQPAMDKNGNIQILTSHTLEPVPIAIGGPGLTPGVRFRNDIPTGGLANVAATVMNLHGFEAPSDYEPTLI 554          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.088e-52
Identity = 101/123 (82.11%), Postives = 113/123 (91.87%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHT  IEATVVACKAADEAVKIIIDAIE+VGGIY+VTADHGNAEDMVKRNK G+PLL K+GNIQ+LTSHTL+PVPIAIGGPGL   V+FR D+PNGGLANVAAT +NLHG+EAP+DYE +LI
Sbjct:  361 VGHTSSIEATVVACKAADEAVKIIIDAIEQVGGIYVVTADHGNAEDMVKRNKKGQPLLDKNGNIQILTSHTLQPVPIAIGGPGLAPGVQFRKDVPNGGLANVAATVMNLHGFEAPADYETTLI 483          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.033e-52
Identity = 100/123 (81.30%), Postives = 112/123 (91.06%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTGDI+AT+ ACK+ADEAVK+I++AIE+VGGIYLVTADHGNAEDMVKRNK GEP L K+GNIQ+LTSHT +PVPIAIGGPGL   V+FR DLP GGLANVAATF+NLHG EAPSDYEPSLI
Sbjct:  432 VGHTGDIKATIEACKSADEAVKMILEAIEQVGGIYLVTADHGNAEDMVKRNKKGEPALDKNGNIQILTSHTCEPVPIAIGGPGLAPGVRFRQDLPTGGLANVAATFMNLHGSEAPSDYEPSLI 554          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.879e-52
Identity = 98/123 (79.67%), Postives = 113/123 (91.87%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTGD+EATVV CKAADEAVK+IIDAIE+VGGIY+VTADHGNAEDMVKR+KSG+P+  K G IQ+LTSHTL+PVPIAIGGPGL   V+FR+D+P GGLANVAAT +NLHG+EAPSDYEP+LI
Sbjct:  429 VGHTGDVEATVVGCKAADEAVKMIIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPMADKSGKIQILTSHTLQPVPIAIGGPGLTPGVRFRSDIPTGGLANVAATVMNLHGFEAPSDYEPTLI 551          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.213e-50
Identity = 98/123 (79.67%), Postives = 111/123 (90.24%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTGDIEATVVACKAADEAVKII+DA+E+VGGIYLVTADHGNAEDMVKRNKSG+PLL K+  IQ+LTSHTL+PVP+AIGGPGL   VKFR D+   GLANVAAT +NLHG+EAP+DYE +LI
Sbjct:  432 VGHTGDIEATVVACKAADEAVKIILDAVEQVGGIYLVTADHGNAEDMVKRNKSGKPLLDKNDRIQILTSHTLQPVPVAIGGPGLHPGVKFRNDIQTPGLANVAATVMNLHGFEAPADYEQTLI 554          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.071e-48
Identity = 95/123 (77.24%), Postives = 109/123 (88.62%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTGDIEATVVAC+AAD AV+ I+DAIE+VGGIY+VTADHGNAEDMVKR+KSG+P L K+GN+Q+LTSHTLKPVPIAIGGPGL   V+FR D+   GLANVAAT +NLHG+ APSDYE SLI
Sbjct:  433 VGHTGDIEATVVACEAADRAVRTILDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPALDKEGNLQILTSHTLKPVPIAIGGPGLSAGVRFRQDIETPGLANVAATVMNLHGFVAPSDYETSLI 555          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 7.870e-48
Identity = 95/123 (77.24%), Postives = 108/123 (87.80%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLL-KDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTGDIEATVVAC+AAD AVK+I DAIE+V GIY+VTADHGNAEDMVKR+KSG+P L K+G +Q+LTSHTLKPVPIAIGGPGL   V+FR DL   GLANVAAT +NLHG+ APSDYEP+LI
Sbjct:  431 VGHTGDIEATVVACEAADLAVKMIFDAIEQVKGIYVVTADHGNAEDMVKRDKSGKPALDKEGKLQILTSHTLKPVPIAIGGPGLAQGVRFRKDLETPGLANVAATVMNLHGFVAPSDYEPTLI 553          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD--GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTG+  ATV A +  D  V+ +    EK   + LVTADHGNA++M + +K G  + KD  GN    TSHTL PVPI+I  P   + ++F + L N GLANVAAT +++ GYE P  Y PSLI
Sbjct:  428 VGHTGNYLATVQAMEFLDGCVERLWKTCEKQNIVLLVTADHGNADEMFQLDKKGN-VEKDSHGNPIPKTSHTLNPVPISILDP--ENKIRFNSKLSNPGLANVAATILDVMGYETPEGYHPSLI 548          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 60/124 (48.39%), Postives = 78/124 (62.90%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKD--GNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 367
            VGHTG+  ATV A +  D  V+ +    EK   + LVTADHGNA++M + +K G  + KD  GN    TSHTL PVPI+I  P   + ++F + L N GLANVAAT +++ GYE P  Y PSLI
Sbjct:  428 VGHTGNYLATVQAMEFLDGCVERLWKTCEKQNIVLLVTADHGNADEMFQLDKKGN-VEKDSHGNPIPKTSHTLNPVPISILDP--ENKIRFNSKLSNPGLANVAATILDVMGYETPEGYHPSLI 548          
BLAST of DR908770 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.943e-16
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 2
Query:    2 VGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 349
            VGHTGD++A + AC+A D+ +  ++ A+EK GG  +VTADHGN + M+     G            T+HTL PVP+ +   G PD    R    +G LA++A T ++L G E+P +
Sbjct:  398 VGHTGDLQAAMKACEAVDQGLGRVLAALEKAGGAMIVTADHGNCDVMIDPETGGPH----------TAHTLNPVPVVV--VGAPDGATLR----DGRLADLAPTILHLMGLESPKE 497          
The following BLAST results are available for this feature:
BLAST of DR908770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PMGI_MESCR1.061e-5280.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU3.088e-5282.112,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_TOBAC4.033e-5281.302,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_RICCO6.879e-5279.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE2.213e-5079.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH2.071e-4877.24Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMG1_ARATH7.870e-4877.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN1.071e-2048.39Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC1.071e-2048.392,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ROSDO7.943e-1638.792,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16898 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908770 ID=DR908770; Name=DR908770; organism=Citrus sinensis; type=EST; length=583bp
GGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGCTG
CTGATGAAGCTGTCAAGATAATCATTGATGCAATAGAGAAAGTTGGTGGA
ATATATCTTGTTACTGCAGATCATGGCAATGCTGAGGACATGGTCAAGAG
GAACAAATCTGGGGAGCCTCTTCTTAAGGATGGCAATATTCAAGTGCTCA
CGTCTCACACTCTTAAACCCGTTCCCATTGCAATCGGAGGTCCTGGACTG
CCAGATGATGTCAAGTTCCGCACAGATCTCCCTAATGGTGGGCTGGCCAA
TGTAGCAGCAACTTTTATCAATCTCCATGGATATGAGGCGCCTAGTGACT
ACGAGCCAAGTCTTATTGAAGTAACTGACGACTGAGAAGTAACTGACGAC
TGGGCGAACAATGGATCGTCGCCTAGATTTTATAACTCCGGAGGAATTCC
GTTAAAACGTAAAACAATAAATTGAATTTTGGGGTCTTGAATTCATTTTG
ATACGCGTGCTGTTTTTCAGCTTACATTTCGATTGCTGTCTGTTGGAGGC
AGACAGAACAATATAGCTCAAAATTTATTTTTG
back to top