CN189536

Overview
NameCN189536
Unique NameCN189536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189536_ssr1 microsatellite CN189536_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189536 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 3 
Query:   66 NSPLIASPAEDLKAKAA--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 335
            NSPL       L  K A    C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of CN189536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN1.949e-1853.26Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189536 ID=CN189536; Name=CN189536; organism=Citrus sinensis; type=EST; length=624bp
AAGAAGAAGAAGGAATGGGATTTCCGTCGGAAGTTAGAGATATTTTTGCA
TCCAGAAGGTCAAATAACTCGCCACTGATTGCCTCTCCTGCTGAAGATCT
AAAGGCTAAGGCCGCCAACGACTGCGTTCAAGAAGGCGTTCGAGCTGGAT
TAAAGGCCGCTGCCGTAATGTGTGTTGTCACCGCTGTGCCGACGTTGGTT
GCAGTTCGAAAAATTCCTTGGGCAAAGGCAAACCTGAATTATACTGGTCA
GGCACTCATCATATCCGCAGTGTCAATTGCTTCTTACTTCATCACTGTTG
ACAAGACTATTTTGGAGTGTGCAAGGAGGAATGCCCAGTATGGCAAACCA
ACTTGAGATTCTGTACCTGAACCGATTCACCATGAAGATGCCATGATATG
CGTAGTGAGCATAGCACACAGGTTCATATGAGAATATTTAAATGTATTTG
AGACAATTTTTTTCCCCACTTGAGCAACCGATGGAATTCTCGTGCAATAA
GTTTACCATTTTATCTTTGGCTGATATCTCTATACTAACTTATCCTTATT
GATATGATTATGAGAAATTAGCGAGCAGTCTGCCAAAAAAAAAAAAATTC
CTTTTGTGGGCTTTCTTGTTTTTC
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