DR908760

Overview
NameDR908760
Unique NameDR908760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.614e-51
Identity = 94/129 (72.87%), Postives = 113/129 (87.60%), Query Frame = 1
Query:  196 KSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL
Sbjct:   67 KSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFL 195          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.408e-50
Identity = 90/129 (69.77%), Postives = 113/129 (87.60%), Query Frame = 1
Query:  196 KSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL
Sbjct:   63 KSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFL 191          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.614e-48
Identity = 88/130 (67.69%), Postives = 104/130 (80.00%), Query Frame = 1
Query:  193 FKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            FKSK++RLFGREKP+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+
Sbjct:   45 FKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFI 174          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 4.614e-48
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 1
Query:  196 KSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL
Sbjct:   42 KTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFL 170          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.640e-46
Identity = 85/129 (65.89%), Postives = 108/129 (83.72%), Query Frame = 1
Query:  196 KSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            K+K++R+FGREKP+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL
Sbjct:   46 KAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.005e-44
Identity = 83/129 (64.34%), Postives = 104/129 (80.62%), Query Frame = 1
Query:  196 KSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            K+K++RLFGREKP+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL
Sbjct:   46 KAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFL 174          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.441e-33
Identity = 67/128 (52.34%), Postives = 91/128 (71.09%), Query Frame = 1
Query:  199 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            S+  RLF R+KPIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFL 167          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 64/131 (48.85%), Postives = 90/131 (68.70%), Query Frame = 1
Query:  190 PFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFL 582
            P  + ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+
Sbjct:   46 PINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFV 173          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.925e-24
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  202 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRD 567
            K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRD 140          
BLAST of DR908760 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  211 RLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRD 567
            +LF R++ IH +LG G  AD+ LWR K +S G++    A W++FE   Y + TL+  + +L L++LFLWS +++ +N+  P +P   + E    E +  LR  +N+ L V  +IA  RD
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARD 125          
The following BLAST results are available for this feature:
BLAST of DR908760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLA_ARATH2.614e-5172.87Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH8.408e-5069.77Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH4.614e-4867.69Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH4.614e-4871.32Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH5.640e-4665.89Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH9.005e-4464.34Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH1.441e-3352.34Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH3.322e-3048.85Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH7.925e-2442.62Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH1.827e-2036.97Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16888 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-08_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908760 ID=DR908760; Name=DR908760; organism=Citrus sinensis; type=EST; length=583bp
TCTAGAGTCTAGTACATTTTTCAATTCATTTTCATCGGCGCTTACTCGGC
GGCAGAGATCTATGGCGGAACATGCACCTGAGCACGAATCAGCCGACAAA
TCACCTGGTGGAGAAGATCACGGATAAGATCCATGGCCACGACTCCTCGT
CATCTGACTCCGATGACGACAAGCCGTCGTCTATTGACGCCCTTTAAGTC
CAAAGTATTCAGGCTCTTCGGAAGAGAAAAACCTATTCACCATGTCCTCG
GAGCTGGAAAACCTGCTGATATTTTCCTATGGAGGAACAAGAAAATCTCT
GCTGGTGTGCTAGGTGGAGCCACTGCAATGTGGGTTCTCTTTGAGTTGCT
GGAATACCATTTAATCACTTTGGTCTGCCATATATCGATTCTCTCTCTGG
CTGTTCTCTTCCTGTGGTCCAATGCATCCACATTTATCAACAAATCACCG
CCAGAGATTCCAGTTGTTACACTTCCTGAGAAGTTTGTCCTTGAATTCGC
CTCTGCCTTGAGGTATGAAATCAACCGAGCCTTGGCTGTCCTGCGGGAAA
TTGCGTCTGGAAGGGACTTGAAGAAGTTTCTTG
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