CN189527

Overview
NameCN189527
Unique NameCN189527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2737 contig Csv1_Contig2737:1..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189527 vs. ExPASy Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.116e-42
Identity = 95/174 (54.60%), Postives = 116/174 (66.67%), Query Frame = 3
Query:  210 GAYKRRYGLHMQP--------CRSFKTD-DKGENEAESELKLKKTSGFWSSLKDVIFRVNGP-----GSQSS------DEYCKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKAL 671
            G  +R   LH +P        CR+FK + D G  EA S      T+      K  ++++        GS+S+       EY +AV K E++F S+A Q+GR ++TMMS+GVVL VGFQLSGGDSQMN LIWYSWLGG+IIGTM+GAN VLEEHCKAGPRNVVITGSTRGLGKAL
Sbjct:   13 GRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYKLKAAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMSSGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKAL 186          

HSP 2 Score: 24.6386 bits (52), Expect = 1.116e-42
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  664 KHFAREFLLSGDR 702
            K  AREFLLSGDR
Sbjct:  184 KALAREFLLSGDR 196          
BLAST of CN189527 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.209e-41
Identity = 98/192 (51.04%), Postives = 120/192 (62.50%), Query Frame = 3
Query:  105 TLTKPHISLQTL-HYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGENEAESELKLKKT--SGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKAL 671
            TLTK  +  Q L H   F+D        P    S L   +R   +++  C         E + E + K++K   +G W SLK      +  G  S DEY + V  +E VFSS+A+QI R IVTM STG +L +GFQLSGGDS MN+L+WYSWLGGIIIGTM GANMVLE+H +AGPRNVVITGSTRGLGKAL
Sbjct:    3 TLTKIQVYPQVLEHRLFFRD--------PIRVGSRLTCRERSNRVYVHRC---------EKKVERKRKVEKFKGNGSWDSLKSGFLGFSKLGFLSKDEYNQKVENLEMVFSSVAVQIARYIVTMTSTGAILLIGFQLSGGDSSMNSLVWYSWLGGIIIGTMTGANMVLEDHYRAGPRNVVITGSTRGLGKAL 177          

HSP 2 Score: 24.6386 bits (52), Expect = 1.209e-41
Identity = 11/13 (84.62%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  664 KHFAREFLLSGDR 702
            K  AREFLLSGDR
Sbjct:  175 KALAREFLLSGDR 187          
The following BLAST results are available for this feature:
BLAST of CN189527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NYC1_ORYSJ1.116e-4254.60Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
NYC1_ARATH1.209e-4151.04Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189527 ID=CN189527; Name=CN189527; organism=Citrus sinensis; type=EST; length=702bp
GAGGCATTTTCCCACAATATCTGGAACTGCAAACTGCAGAAGCACTCGCA
TTACATGAACTCGCGTTCTTTTAATCTCAAGCTCTCGCGAAGATGACACC
AGCAACACTCACCAAGCCGCACATATCCCTACAAACCTTGCACTATTACT
GCTTCAAGGACCAGCAGCGCGGGCCCTGTCTCAGACCGGCTTCTTACCGG
TCCGGTTTGGGTGCGTATAAACGCCGTTATGGGTTGCACATGCAGCCGTG
CAGGTCCTTCAAGACCGACGACAAGGGAGAAAATGAGGCGGAGAGTGAGC
TAAAGTTGAAGAAAACAAGTGGGTTCTGGAGTTCTTTGAAAGATGTTATT
TTTCGGGTAAATGGGCCGGGTTCTCAATCAAGTGATGAGTATTGTAAGGC
CGTGGCTAAAGTTGAGAAAGTTTTCTCTTCGATTGCCATTCAAATTGGGA
GATGTATAGTGACAATGATGAGCACTGGAGTTGTACTTGCCGTTGGTTTT
CAGTTGTCAGGTGGAGACAGCCAGATGAATGCACTGATATGGTATAGCTG
GCTTGGAGGAATTATTATTGGAACTATGGTAGGAGCTAATATGGTTCTAG
AAGAACACTGTAAAGCTGGTCCAAGAAATGTTGTCATTACTGGAAGTACG
AGGGGACTAGGAAAAGCACTTTGCTCGAGAATTTCTTCTTTCTGGAGATA
GA
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