DR908757

Overview
NameDR908757
Unique NameDR908757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908757 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.268e-13
Identity = 47/132 (35.61%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  193 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIG 582
            G  L+ ++V +L+ D     + +  G+ +AVT +ENIG+G +R+ TG V FPV +  + F+ F+GE+L+  V  V K G F + GPV+ I+++   +P D  +   + P +  S+ + KI+KD  VR+ +IG
Sbjct:   19 GRNLRDNLVSKLMKDVEGTCSGRH-GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIG 148          
BLAST of DR908757 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 45/132 (34.09%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  193 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQA-ENPVF-LSEKNPKIEKDVVVRVIVIG 582
            G  L+ ++V +L+ D     + +  G+ +A+T ++ IG+G +R+ TG V FPV +  + F+ F+GE+L+  V  V K G F + GPV+ I+++   +PD    QA + P +  S+ + KI+K+  VR+ +IG
Sbjct:   19 GRNLKENLVSKLMKDVEGTCSGRH-GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIG 148          
BLAST of DR908757 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  193 GPMLQRSIVVRLLDDFARRKATKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIG 582
            GP L  ++  +L  +      T   G+ +AVTT++NIG G ++   G VL+PV +  I F+ F+GEV+D  V +V K G+F + GP+       S   +  +    NP      +++  I++D  +R+ ++G
Sbjct:   19 GPNLLNTVKQKLFTE-VEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVG 149          
The following BLAST results are available for this feature:
BLAST of DR908757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RPB7_SOYBN1.268e-1335.61DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
RPB7_ARATH1.831e-1234.09DNA-directed RNA polymerase II subunit RPB7 OS=Ara... [more]
RPB7_DANRE7.694e-1130.30DNA-directed RNA polymerase II subunit RPB7 OS=Dan... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16885 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-45_F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908757 ID=DR908757; Name=DR908757; organism=Citrus sinensis; type=EST; length=584bp
TCATTGTGACTGTGAGAGCACCAAGGTTCACGAGAGAAGAGGACGAGTCA
CGGACGCAGTGAGTCACAAAACTTCTTCCGTCTACAGGGCGAGCAAGGCT
TGAGCATTCGGCCCTTATTGTGAAACAAAATGTTTCTTAAAGTGAAGTTG
CCCTGGAATGTCGTAGTCCCTGCCGAAAATCTGGATGCAAAAGGTCCGAT
GCTTCAGAGGTCCATTGTCGTCCGTCTGTTGGATGACTTTGCTCGCAGAA
AGGCCACCAAAGATCTTGGATACTTTCTTGCTGTCACAACTCTGGAGAAC
ATAGGGGAGGGAAGAGTTAGAGAGAACACAGGGGAGGTTCTCTTTCCTGT
TGTTTTCAGTGGTATCACCTTCAAAATTTTCAGGGGGGAGGTCTTGGATG
GGACTGTGCACAAGGTGCTCAAGCATGGTGTTTTCTTGAAGTGCGGGCCA
GTCGAGAACATATACCTTACTTGTTCGAAAATGCCTGATTACCGTTATGT
GCAGGCAGAGAATCCAGTCTTCCTGAGTGAGAAGAACCCAAAAATTGAGA
AAGATGTCGTAGTTCGTGTAATTGTGATTGGAAC
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