CN189520

Overview
NameCN189520
Unique NameCN189520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189520_ssr656 microsatellite CN189520_ssr656:656..667. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189520 vs. ExPASy Swiss-Prot
Match: Y1461_ARATH (Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = -1 
Query:  137 IAIDDHQVEKK--MIYDQIERKKKVDEQIEKCEVNV-------INHHPAIGRLPKGVEGEQVAAGWPTWLATVAGEAIKGWIPRRANTFEKLDKV 394
            + + +  V K   +I D +E+KK  +   +K   +           +P +    K   GEQVAAGWP+WL+   GEA+ GW+PR+A+TFEK+DK+
Sbjct:   30 VVVGESSVTKSNGVIADDVEKKKNEEANGDKERKSSKGDRRRSTKPNPRLSNPSKHWRGEQVAAGWPSWLSDACGEALNGWVPRKADTFEKIDKI 124
The following BLAST results are available for this feature:
BLAST of CN189520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1461_ARATH1.336e-1136.84Probable serine/threonine-protein kinase At1g54610... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001P22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189520 ID=CN189520; Name=CN189520; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTTTTTTTTTTATAAAGCAAATATGAAATAATACTCAACCTGAC
GAAGAAAAAGCAATACTCACACCTTACAAGAAACAAAAATTGAATTGAAA
GCAAATTGAGAATCACATGAAATCAATAAAAGAACTTACTTTATCCAACT
TCTCAAAAGTATTAGCACGCCGCGGTATCCATCCCTTGATAGCCTCACCA
GCCACCGTAGCAAGCCAAGTCGGCCACCCTGCCGCCACCTGCTCCCCTTC
TACACCTTTAGGCAATCTCCCAATAGCCGGATGATGATTAATTACATTCA
CTTCACACTTCTCAATCTGCTCATCAACCTTCTTTTTCCTCTCAATTTGA
TCATAAATCATCTTCTTCTCAACCTGATGATCGTCAATAGCAATCTTCTC
AATCTTATGATGATCATAATACCTATTGGAACCATTGACTCTCTTATCAA
TCAACAAAACCTTCACATCAGTTTTGTCCCCTTTACCCTTTGGTCGAACA
ACTTCCTCTCTTCTTGAAGAACTGACCCGTGCCACGTGCTTATTCAATGA
CTCCTCTTTTCGATTTAGCCTCTCCCGGCTGTCTTCAACAGCTGTGGGCT
TAGCACACTTACCACCCATATCACCAGAGCAATCCCAAAATCAATCCCAA
AAAAAAAATAAATAAATAAAAAATCAATCTTCAAGAAAATATCAGCACCA
AAAAACCCT
back to top