CN189516

Overview
NameCN189516
Unique NameCN189516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1182..1882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.728e-84
Identity = 151/157 (96.18%), Postives = 154/157 (98.09%), Query Frame = -2
Query:  230 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 700
            DKMDP+ LVKLIEILNP NK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  378 DKMDPSALVKLIEILNPDNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 534          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.482e-84
Identity = 150/157 (95.54%), Postives = 155/157 (98.73%), Query Frame = -2
Query:  230 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 700
            DKMDP+ LVKLIEILNPQNK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  377 DKMDPSALVKLIEILNPQNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 7.482e-84
Identity = 150/157 (95.54%), Postives = 155/157 (98.73%), Query Frame = -2
Query:  230 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 700
            DKMDP+ LVKLIEILNPQNK GRITIITRMGAENMRVKLPHLIRAVRR+GQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  377 DKMDPSALVKLIEILNPQNKAGRITIITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.194e-81
Identity = 144/157 (91.72%), Postives = 152/157 (96.82%), Query Frame = -2
Query:  230 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 700
            DKM+P +LVKLIEILNP NKPGRITIITRMGAENMRVKLPHLIRAVR SGQIVTW++DPMHGNTIKAPCGLKTRPFDSI AEVRAFFDVH+QEGSHPGG+HLEMTGQNVTECIGGSRTVTFDDLS RYHTHCDPRLNASQSLELAFIIAERLR+RR+
Sbjct:  368 DKMNPRDLVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIHLEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRM 524          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.560e-80
Identity = 143/157 (91.08%), Postives = 151/157 (96.18%), Query Frame = -2
Query:  230 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 700
            DKM+P ELVKLIEILNP NKPGRITIITRMGAENMRVKLPHLIRAVR +GQIVTW++DPMHGNTIKAPCGLKTRPFDSI AEVRAFFDVH+QEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDL  RYHTHCDPRLNASQSLEL+FIIAERLR++RI
Sbjct:  383 DKMNPTELVKLIEILNPSNKPGRITIITRMGAENMRVKLPHLIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSI-AEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRI 538          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 2.491e-79
Identity = 142/156 (91.03%), Postives = 148/156 (94.87%), Query Frame = -2
Query:  233 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 700
            +KMDP ELVKL+EILNP NKPGRIT+I RMGAENMRVKLPHLIRAVRRSGQIVTWV DPMHGNTIKAPCGLKTR FDSI AEVRAF DVHEQEGSH GG+HLEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRKRR
Sbjct:  363 NKMDPFELVKLVEILNPNNKPGRITVIVRMGAENMRVKLPHLIRAVRRSGQIVTWVCDPMHGNTIKAPCGLKTRAFDSILAEVRAFLDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRKRR 518          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.596e-78
Identity = 137/156 (87.82%), Postives = 148/156 (94.87%), Query Frame = -2
Query:  230 KMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 697
            KMDPNEL+KLI+ILNP NKPGRIT+I RMGAENMRVKL HL+RAVR +GQIVTWV DPMHGNTIKAPCGLKTR FDSI AEVRAFFDVHEQEGSHPGG+HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  351 KMDPNELIKLIDILNPANKPGRITVIVRMGAENMRVKLSHLVRAVRGAGQIVTWVCDPMHGNTIKAPCGLKTRAFDSILAEVRAFFDVHEQEGSHPGGIHLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.511e-76
Identity = 138/157 (87.90%), Postives = 150/157 (95.54%), Query Frame = -2
Query:  230 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 700
            DKM P+ELVKLIEILNPQNKPGRIT+I RMGAENMRVKLP+LIRAVR +GQIVTWVSDPMHGNTI AP GLKTR FD+IRAE+RAFFDVH+QEGS PGGVHLEMTGQNVTEC+GGSRT+T++DLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  340 DKMVPSELVKLIEILNPQNKPGRITVIVRMGAENMRVKLPNLIRAVRGAGQIVTWVSDPMHGNTIMAPGGLKTRSFDAIRAELRAFFDVHDQEGSFPGGVHLEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 496          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.499e-76
Identity = 134/156 (85.90%), Postives = 146/156 (93.59%), Query Frame = -2
Query:  230 KMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 697
            KMDP EL+KLI+ILNP NKPGRIT+I RMGAENMRVKL HL+RAVR +GQIVTWV DPMHGNTIKAPCGLKTR FDSI+AEVRAFFDVHEQEGSHP  +HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  351 KMDPKELIKLIDILNPANKPGRITVIVRMGAENMRVKLSHLVRAVRGAGQIVTWVCDPMHGNTIKAPCGLKTRAFDSIQAEVRAFFDVHEQEGSHPWCIHLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of CN189516 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 7.035e-66
Identity = 123/153 (80.39%), Postives = 132/153 (86.27%), Query Frame = -2
Query:  239 KMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 697
            KMDPNELV LIEILNP NKPGRIT+I RMGAENMRVKLPHLIRAVR +GQIVTWV DPMHGNTIKAPCGLKTR FD+I AEVRAF+DVHEQEG+ PG           TEC+GGSRT+T+DD  +RYHTHCDPRLNASQSLELAFIIAERLRK
Sbjct:  342 KMDPNELVNLIEILNPTNKPGRITVIVRMGAENMRVKLPHLIRAVRGAGQIVTWVCDPMHGNTIKAPCGLKTRAFDAILAEVRAFYDVHEQEGTLPG-----------TECVGGSRTITYDDRQTRYHTHCDPRLNASQSLELAFIIAERLRK 483          
The following BLAST results are available for this feature:
BLAST of CN189516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AROF_TOBAC5.728e-8496.18Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC7.482e-8495.54Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLTU7.482e-8495.54Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ1.194e-8191.72Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_ORYSJ8.560e-8091.08Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH2.491e-7991.03Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLTU3.596e-7887.82Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ARATH1.511e-7687.90Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC7.499e-7685.90Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_CATRO7.035e-6680.39Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P20_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189516 ID=CN189516; Name=CN189516; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTCGATGTATCTAAATCCCATATTTTTTTATTCCTTCGTTCCTTAC
GTCTCAAGCCATCATGTCCTTTTAATATACACATTCAGTACATGACATAA
ATTAAATCAAAAAACCAAAATTAAAAATACTAGCACAGCTGCTAAACTTG
AAGAAAAATAATAATATATGCCAGCAGTACTCGGGCCATTCTACAGGAGA
GAAGAAGAGGCAAGAGGTTGCTGTGAGCTAATCCTCCTCTTTCTGAGGCG
CTCGGCAATGATGAAGGCAAGCTCAAGTGACTGTGAAGCATTGAGCCTAG
GGTCACAGTGGGTGTGGTAGCGTGAACTCAAGTCGTCGAATGTCACTGTT
CTTGACCCACCGATGCACTCTGTCACATTCTGGCCTGTCATCTCCAAATG
TACTCCTCCCGGGTGACTTCCTTCTTGCTCATGCACATCAAAGAATGCTC
TCACTTCAGCCCTGATAGAATCGAAGGGACGAGTTTTCAGGCCGCAGGGA
GCCTTGATGGTGTTACCATGCATAGGGTCACTGACCCATGTAACAATTTG
GCCAGAGCGGCGGACTGCCCTAATTAGATGAGGAAGCTTCACTCTCATGT
TCTCAGCACCCATTCTAGTGATAATAGTTATCCTCCCCGGTTTATTCTGA
GGATTCAAAATCTCAATAAGCTTCACTAGCTCATTAGGATCCATCTTATC
A
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