CN189500

Overview
NameCN189500
Unique NameCN189500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.552e-80
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 4.517e-80
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGL+WLSNNIASKA
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 4.517e-80
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 297.36 bits (760), Expect = 4.517e-80
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.006e-79
Identity = 143/148 (96.62%), Postives = 145/148 (97.97%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.716e-79
Identity = 143/148 (96.62%), Postives = 144/148 (97.30%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNNIASK+
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 2.242e-79
Identity = 143/148 (96.62%), Postives = 144/148 (97.30%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNNI+SKA
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 4.994e-79
Identity = 141/147 (95.92%), Postives = 144/147 (97.96%), Query Frame = -3 
Query:  223 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG H  RQRHWYIQSTCATSGEGLYEGLDWLSNN+A+K
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.227e-78
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG +  RQRHWYIQSTCAT+GEGLYEGLDWLS+NIA+K+
Sbjct:   34 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181
[Close]
BLAST of CN189500 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.606e-77
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = -3 
Query:  220 LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGFHFFRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 663
            LY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK G H  RQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   34 LYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181
The following BLAST results are available for this feature:
BLAST of CN189500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
ARF1_ARATH1.552e-8097.97ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN4.517e-8097.30ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ARATH4.517e-8097.30ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ORYSJ4.517e-8097.30ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF2_ORYSJ1.006e-7996.62ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_DAUCA1.716e-7996.62ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA2.242e-7996.62ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CHLRE4.994e-7995.92ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF_MAIZE4.227e-7894.59ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_CATRO1.606e-7794.59ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P12_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189500 ID=CN189500; Name=CN189500; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTCCGAACAGACGCATCATCATCTTAATAGTTATG
TAGGATTATACAAAATCCATACTTCACATAGCAGTAGATTTTCAACAAAC
ATTATGCTGTTATAGAAGTGACTGAACAAAAGGGAAACTATCTTCTTCAA
AATAGCTAGAATAGGTATAAGCCATAACAAAATCTAAAAGAGGAGCCAGA
ATCTTCACTGCTTCATTCAAGCCTTGCTAGCGATGTTGTTGGAAAGCCAA
TCCAACCCTTCATAAAGACCCTCTCCAGAGGTTGCACATGTGCTCTGGAT
ATACCAGTGTCGCTGGCGAAAAAAATGAAAACCGAGCTTGTCAGTTATTT
CTGCAGCATTCATTGCATTCGGAAGATCTTGTTTGTTAGCAAATACAAGC
AGAACAGCATCCCTCAATTCATCCTCATTCAACATTCGGTGCAACTCATC
CCTTGCCTCAACTACTCTATCCCTGTCATTGCTATCCACCACAAAAATGA
GGCCCTGAGTGTTCTGAAAATAGTGCCTCCACAATGGACGGATCTTGTCC
TGACCTCCGACATCCCAAACCGTGAAGCTAATGTTCTTGTATTCAACCGT
CTCCACATTAAAACCGATTGTAGGGATGGTGGTGACGATCTCACCGAGCT
TAAGCTTGTACAAAA
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