CN189476

Overview
NameCN189476
Unique NameCN189476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189476 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 59/143 (41.26%), Postives = 83/143 (58.04%), Query Frame = -2
Query:  261 RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 689
            R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  182 RIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CN189476 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = -2
Query:  261 VFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 686
            +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  185 IFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CN189476 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 51/131 (38.93%), Postives = 73/131 (55.73%), Query Frame = -2
Query:  294 VFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 686
            V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  185 VYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CN189476 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 51/143 (35.66%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  261 RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 689
            RVFL GDSSGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  191 RVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of CN189476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH8.778e-2141.26Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH6.291e-1938.03Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH3.122e-1838.93Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ3.231e-1535.66Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001O20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001O20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189476 ID=CN189476; Name=CN189476; organism=Citrus sinensis; type=EST; length=693bp
GAGGAATAACTTGGAGCACAACTAAAACAATGTAAAAATCACACGCTTGC
AATGTTACTTATTTTTGTATATTTTAATTGGGTTGTTAAGTTACGACAAA
TGTAACTTAAGAAAAACCCCACCATTAATCGGATAATCAACTATTTATGG
ATTAAAAAATTGATAATTGATCAGTGCTTCCTCATAAACTCCGCTATTCC
TTGAAAAAGACTACAAGTTTGAGCAGCAGTGTTTGGGTCCATATCGACTG
CAATCTTGTCGAGATAAAAACTGTGACCCATTCCAGGATTCACCAACAAC
TCCACATCCTTTCCAGCCTTTTTCATGGCTTCATAATATTCCATCTCAGT
GTCCTTAATCAAGTCATTACCCGCCACGCACAGCAGAAACGGAGGCAGCT
TCAGACCGTCGATCGGCGACGCAGCCGGCCCCATTGGACAGGTGTACGGA
TGCCCCTTGTCGCTGTTCAACGGCAGGGCAAAGCTCAAGAACTTGTCCAC
CATGTCCAGAGTCAGAAGAGGTGACTGCGGGTTTTCCAACTCCGACTTGC
TCCTTTCCTGCCGGAGGAAACCCGGATGAATCGGAATCGCTCCGGCCACA
CGCAACGGGCTCAAGTCCGCGTCACCTGCACGTGCCGCCACTTCATGCAC
TACGTTCCCTCCGGAGCTGTCTCCAATGAGGAAAACGCGTTGA
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