CN189429

Overview
NameCN189429
Unique NameCN189429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.763e-27
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPSTNC+ V+
Sbjct:   66 TTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117

HSP 2 Score: 62.7734 bits (151), Expect = 8.763e-27
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 2 
Query:  104 PVTNAITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAARNHP 247
            P+  AITCGQV+++L PCIP++R GG   PP CC+G+R++N  AR  P
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAV-PPACCNGIRNVNNLARTTP 68
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.595e-25
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPST+CS+V+
Sbjct:   65 TTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

HSP 2 Score: 61.6178 bits (148), Expect = 1.595e-25
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  104 PVTNAITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAARNHP 247
            P T A++CGQV++SL PCI +L  GG   PP CCSGV+SLN AA+  P
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAV-PPACCSGVKSLNSAAKTTP 67
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.704e-25
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TT DRQ ACNCLK    +I G+ PN AAGLP +CGV +PYKIS STNC+ V+
Sbjct:   64 TTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115

HSP 2 Score: 62.003 bits (149), Expect = 2.704e-25
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = 2 
Query:  107 VTNAITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAAR 238
            V +AITCGQVT+SL PCI ++R+GG   PP CC+G+R++NG AR
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAV-PPACCNGIRTINGLAR 63
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.315e-24
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS STNC+ V+
Sbjct:   40 TTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91

HSP 2 Score: 57.3806 bits (137), Expect = 1.315e-24
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:  119 ITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAARNHP 247
            ITCGQV+++L PCIP++R GG   PP CC+G+R++N  AR  P
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAV-PPACCNGIRNVNNLARTTP 42
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.901e-24
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPST+C  V+
Sbjct:   40 TTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91

HSP 2 Score: 54.6842 bits (130), Expect = 2.901e-24
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:  119 ITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAAR 238
            ITCGQV++SL PCI +LR GG   P  CC+GVRSLN AA+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAK 39
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.389e-23
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TTPDRQAACNCLK    ++ G+ P  A  LP +CGV +PYKIS STNC+ V+
Sbjct:   64 TTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115

HSP 2 Score: 57.7658 bits (138), Expect = 2.389e-23
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:  107 VTNAITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAARNHP 247
            V +AITC QV+A+L PCI ++R+GG   PP CC+G++++NG A+  P
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAV-PPACCNGIKTINGLAKTTP 66
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.110e-23
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TTPDR+ ACNCLK+   +I G+ PN AA LP +CGV IPYKIS STNC+ V+
Sbjct:   40 TTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91

HSP 2 Score: 55.0694 bits (131), Expect = 3.110e-23
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  119 ITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAARNHP 247
            ITCGQV++SL PCI ++R GG   PP CC+G+R++N  AR  P
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAV-PPACCNGIRNVNNLARTTP 42
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.921e-23
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPSTNC+ V+
Sbjct:   66 TTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117

HSP 2 Score: 56.225 bits (134), Expect = 8.921e-23
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  104 PVTNAITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAAR 238
            P+  A+TCGQV+++L PCI ++R GG   PP CC+G+R++N  A+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAV-PPACCNGIRNINNLAK 65
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.104e-21
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRVR 395
            TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS STNC+ ++
Sbjct:   64 TTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112

HSP 2 Score: 56.9954 bits (136), Expect = 2.104e-21
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 2 
Query:  107 VTNAITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAARNHP 247
            V  AITCG V +SL PC+ +L  GG   PPPCC+GV+ LNG A+  P
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTP 66
[Close]
BLAST of CN189429 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.711e-21
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:  240 TTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVRIPYKISPSTNCSRV 392
            TT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS ST+CSRV
Sbjct:   71 TTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121

HSP 2 Score: 54.299 bits (129), Expect = 2.711e-21
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 2 
Query:  116 AITCGQVTASLDPCIPFLRTGGRFPPPPCCSGVRSLNGAAR 238
            A+TCGQV++++ PC+ + R  G  P   CCSGVRSLN AAR
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAAR 70
The following BLAST results are available for this feature:
BLAST of CN189429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
NLTP1_PRUDU8.763e-2765.38Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN1.595e-2565.38Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_MALDO2.704e-2563.46Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE1.315e-2465.38Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
LTP1_MORNI2.901e-2465.38Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_PYRCO2.389e-2359.62Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR3.110e-2363.46Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV8.921e-2359.62Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP4_ARATH2.104e-2155.77Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_SORBI2.711e-2164.71Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189429 ID=CN189429; Name=CN189429; organism=Citrus sinensis; type=EST; length=616bp
CGGTTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTCA
TGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGACT
GCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGA
TCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCAT
GCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGGAACCACCCCTGA
CCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACTGAACAATCCGCG
GCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGA
ATTCCTTACAAGATCAGCCCCAGCACCAACTGCTCTAGGGTCAGGTGAAG
TTGAATTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGATAAGAATAA
ATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACT
TGTATGAGTTTCACTCTCATGTCATGTGTGTATATTTGCTTGTTATGTCA
TATTAAATATGTAAACGCCATCTGTGTTTTGAGTGATTAATTATAGTTAT
TTTGTGGTATTAAAAA
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