CN189404

Overview
NameCN189404
Unique NameCN189404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189404_ssr398 microsatellite CN189404_ssr398:398..409. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.883e-46
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSSSQYPDVNHATV T+ GEKPVRELV DD WLNGEFITTVQQRGAAIIK
Sbjct:  141 LKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQYPDVNHATVKTSTGEKPVRELVSDDEWLNGEFITTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.423e-46
Identity = 88/97 (90.72%), Postives = 94/97 (96.91%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP +NI+CLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSS+QYPDVNHATVNT AGEKPVR+LV DDAWLNGEFI+TVQQRGAAIIK
Sbjct:  141 LKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVNTPAGEKPVRQLVSDDAWLNGEFISTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.066e-44
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSS+QYPDVNHATV T   +KPVRELV DDAWLNGEFITTVQQRGAAIIK
Sbjct:  141 LKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQYPDVNHATVKTQGVDKPVRELVADDAWLNGEFITTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.524e-44
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVKNVIIWGNHSS+QYPDVNHATV T+ GEKPVRELVK+D WLNGEFI+TVQQRGAAIIK
Sbjct:  141 LKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNVIIWGNHSSTQYPDVNHATVKTSVGEKPVRELVKNDEWLNGEFISTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.524e-44
Identity = 86/97 (88.66%), Postives = 93/97 (95.88%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVKNVIIWGNHSSSQYPDVNHA V T++GEKPVRELVKDDAWL+GEFI+TVQQRGAAIIK
Sbjct:  141 LKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVIIWGNHSSSQYPDVNHAKVQTSSGEKPVRELVKDDAWLDGEFISTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.012e-44
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP KNITCLTRLDHNRALGQISEKLNVQV+DVKN IIWGNHSS+QYPDVNHATV T +GEKPVRELV DD WLN EFI+TVQQRGAAIIK
Sbjct:  141 LKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 87/97 (89.69%), Postives = 89/97 (91.75%), Query Frame = -1
Query:    3 LKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 293
            LKEFAPSIP KNITCLTRLDHNRALGQISE+LN QVSDVKNVIIWGNHSSSQYPDVN  TV T +GEK VRELV DDAWLNGEFITTVQQRGAAIIK
Sbjct:  141 LKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVKNVIIWGNHSSSQYPDVNPCTVKTGSGEKAVRELVADDAWLNGEFITTVQQRGAAIIK 237          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_PIG (Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN=MDH1 PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 4.042e-32
Identity = 68/93 (73.12%), Postives = 74/93 (79.57%), Query Frame = -1
Query:    3 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 281
            APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V   A E  V E VKDD+WL GEFITTVQQRGAA+IK
Sbjct:  144 APSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 236          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.536e-31
Identity = 66/93 (70.97%), Postives = 74/93 (79.57%), Query Frame = -1
Query:    3 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 281
            APSIP +N +CLTRLDHNRA GQI+ KLNV   DVKNVIIWGNHSS+QYPD +HATVN    +    E VK+D WL GEFITTVQQRGAA+IK
Sbjct:  144 APSIPKENFSCLTRLDHNRAKGQIALKLNVASDDVKNVIIWGNHSSTQYPDASHATVNLQGKDVGAFEAVKNDDWLKGEFITTVQQRGAAVIK 236          
BLAST of CN189404 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.536e-31
Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = -1
Query:    3 APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 281
            APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QYPDVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IK
Sbjct:  144 APSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIK 236          
The following BLAST results are available for this feature:
BLAST of CN189404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDHC_MAIZE2.883e-4691.75Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_MEDSA6.423e-4690.72Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC_MESCR2.066e-4489.69Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC2_ARATH3.524e-4487.63Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC1_ARATH3.524e-4488.66Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_ORYSJ6.012e-4488.66Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_BETVU7.851e-4489.69Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_PIG4.042e-3273.12Malate dehydrogenase, cytoplasmic OS=Sus scrofa GN... [more]
MDHC_XENTR1.536e-3170.97Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_RAT1.536e-3170.97Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189404 ID=CN189404; Name=CN189404; organism=Citrus sinensis; type=EST; length=719bp
GCTTTGATGATTGCAGCACCACGTTGTTGGACTGTGGTTATGAATTCTCC
ATTCAACCATGCATCATCCTTGACAAGCTCACGGACAGGCTTTTCCCCAG
CTGCAGTATTGACAGTTGCATGGTTGACATCAGGGTACTGAGATGATGAA
TGATTTCCCCAAATAATCACATTCTTAACATCAGATACTTGGACATTCAG
TTTCTCAGATATTTGTCCCAATGCCCTGTTATGATCCAATCTGGTCAAGC
ATGTAATGTTCTTAGCAGGGATTGATGGCGCAAATTCTTTCAATCTACAA
GGCTCAGGCTTCTGCCCTGGAGCAGCACGCAGCTCCGAACTGCAAGGTTC
TAGTTGTCGCTAACCCTGCTTTTCATAAAACTTCTTATCATAAACATTTA
ATTAATTAATACATACTTAAAAAAAAAATTAACACATCACAAGATCTTTT
ATTTACCACAATGCTTAATAGGGCACACAAAAGAATGCTTAAAATTAACT
AAATACAACCTGGCAATATACTGTTACATATTTAAGCTCAAAAGCAAACA
CCAACTAGAGCTCCATTTTTCCCTCAGCAATCCAATTGTTCTCCAAATCT
TAAACTTTCCCATCATTGAAATTCTCAAGCTCTTTATCTCCCTTAACACG
ATGCTGCACATTATACTGATGCTTCATTGCAACGAAAAGAAACACCATGA
AATTCAAAAGTCCTAGCAC
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