CN189386

Overview
NameCN189386
Unique NameCN189386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1570 contig Csv1_Contig1570:308..971. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 3.779e-119
Identity = 213/220 (96.82%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEVY++FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPDNI++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT
Sbjct:   30 EFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 6.447e-119
Identity = 212/220 (96.36%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEVYD+FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT
Sbjct:   30 EFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 3.199e-118
Identity = 210/220 (95.45%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEVYD+FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD++T
Sbjct:   30 EFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDDVT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 3.199e-118
Identity = 210/220 (95.45%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEVYD+FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD++T
Sbjct:   30 EFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDDVT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 7.128e-118
Identity = 210/220 (95.45%), Postives = 219/220 (99.55%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEV+++FD MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ+LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT
Sbjct:   31 EFFTSYDEVFESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 250
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A_MAIZE (Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.309e-118
Identity = 211/220 (95.91%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            DFFTSYD+V ++FD+MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL+SGVHVVVGTPGRVFDMLRRQSLRPDNI++FVLDEADEMLSRGFKDQIYDIFQLLP KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT
Sbjct:   27 DFFTSYDDVCESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 246
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.309e-118
Identity = 211/220 (95.91%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            DFFTSYDEVY +FDAMGL+ENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY L++CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT
Sbjct:   30 DFFTSYDEVYHSFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYELLDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF413_TOBAC (Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 9.309e-118
Identity = 209/220 (95.00%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEVYD+FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMN+PVRILVKRD++T
Sbjct:   30 EFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNQPVRILVKRDDVT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.216e-117
Identity = 208/220 (94.55%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            DFFTSYDEVYD+FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV+CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL++GVHV+VGTPGRVFDMLRRQSLRPD +R+FVLDEADEMLSRGFKDQIYDIFQ+LP K+QVGVFSATMPPEAL+ITRKFMNKPVRILVKRDELT
Sbjct:   30 DFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAGVHVIVGTPGRVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDITRKFMNKPVRILVKRDELT 249
[Close]
BLAST of CN189386 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 1.216e-117
Identity = 209/220 (95.00%), Postives = 218/220 (99.09%), Query Frame = 2 
Query:    5 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT 664
            +FFTSYDEVYD+FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG+LQQLDY LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL SGVHVVVGTPGRVFDMLRRQSLRPD+I++FVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM+KPVRILVKRD++T
Sbjct:   30 EFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDDVT 249
The following BLAST results are available for this feature:
BLAST of CN189386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF411_TOBAC3.779e-11996.82Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A2_NICPL6.447e-11996.36Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF4A7_TOBAC3.199e-11895.45Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]
IF410_TOBAC3.199e-11895.45Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF4A3_ORYSJ7.128e-11895.45Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A_MAIZE9.309e-11895.91Eukaryotic initiation factor 4A OS=Zea mays PE=2 S... [more]
IF4A9_TOBAC9.309e-11895.91Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF413_TOBAC9.309e-11895.00Eukaryotic initiation factor 4A-13 (Fragment) OS=N... [more]
IF4A8_TOBAC1.216e-11794.55Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF414_TOBAC1.216e-11795.00Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189386 ID=CN189386; Name=CN189386; organism=Citrus sinensis; type=EST; length=664bp
GACGGATTTCTTCACATCGTATGATGAGGTTTATGATACTTTTGATGCTA
TGGGATTGCAAGAGAATCTTCTTAGAGGCATTTATGCATATGGTTTTGAG
AAGCCTTCTGCCATTCAGCAAAGGGGGATTGTTCCATTCTGCAAGGGACT
TGATGTAATTCAACAAGCACAGTCTGGAACTGGAAAAACTGCAACTTTTT
GCTCCGGAATTTTGCAGCAGCTTGATTATGGTTTAGTTGAATGCCAAGCA
TTGGTTCTTGCTCCAACTAGGGAACTGGCGCAACAGATTGAGAAGGTTAT
GCGAGCACTTGGTGACTATCTTGGTGTCAAAGTGCATGCATGTGTAGGTG
GAACCAGTGTCCGTGAAGATCAACGCATTCTTTCAAGCGGTGTACATGTT
GTAGTTGGTACACCTGGTCGTGTGTTTGACATGTTGCGGAGGCAATCTCT
TCGCCCAGATAACATCAGGATCTTTGTGCTGGATGAGGCTGATGAAATGC
TGTCACGAGGTTTCAAAGACCAGATCTATGATATCTTCCAGTTGCTACCC
CCAAAGATTCAAGTTGGGGTTTTCTCTGCCACAATGCCACCAGAGGCCCT
TGAAATCACAAGGAAGTTCATGAATAAACCGGTTAGGATTCTGGTGAAAC
GTGATGAGCTTACC
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