CX044487

Overview
NameCX044487
Unique NameCX044487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.309e-58
Identity = 113/156 (72.44%), Postives = 131/156 (83.97%), Query Frame = -1
Query:  232 AKVQPSTLIPKQVGNMYTASPYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDS--SLLAPGTYYLTEVDSMYRRFYAKKPADVTNCENGSLANGH 693
            AKVQP+TLIPK+VGNMYTAS YAA ASLIH KH++L GKRVV+FSYGSG TATMFSL+L++ + PFS+SNI SVM+V GKLK+RHE+ PE FVE MKLMEHRYGAKDFVT+K+    LLAPGTYYL EVDS+YRRFY KK       E+GS+ANGH
Sbjct:  312 AKVQPTTLIPKEVGNMYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKG------EDGSVANGH 461          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS1_BLAGE (Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella germanica GN=HMGCS-1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.840e-24
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLIHNKHS-ELDGKRVVLFSYGSGLTATMFSLKLS-EGRHPFSLSNILS-VMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K +PS L+  QVGNMYT S Y  L SL+ +K + EL GKRV LFSYGSGL ++MFSL++S +     SL  ++S + ++  +L  RH+  PE F + M+  EH +    +       +L PGT+YL  VDS+YRR Y + P
Sbjct:  312 KTKPSLLLANQVGNMYTPSLYGGLVSLLVSKSAQELAGKRVALFSYGSGLASSMFSLRISSDASAKSSLQRLVSNLSHIKPQLDLRHKVSPEEFAQTMETREHNHHKAPYTPEGSIDVLFPGTWYLESVDSLYRRSYKQVP 452          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS2_RAT (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Rattus norvegicus GN=Hmgcs2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.007e-22
Identity = 61/141 (43.26%), Postives = 81/141 (57.45%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K + S  +    GNMYT+S Y  LASL+ H+   EL G R+  FSYGSGL A+ FS ++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D+S L PGT+YL  VD M+RR YA++P
Sbjct:  367 KTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARRP 507          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS2_MOUSE (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Mus musculus GN=Hmgcs2 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.043e-21
Identity = 61/141 (43.26%), Postives = 80/141 (56.74%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K + S  +    GNMYT+S Y  LASL+ H+   EL G R+  FSYGSGL A+ FS ++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D+S L PGT+YL  VD M+RR YA+ P
Sbjct:  367 KTKASLYLSTNNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSKDASPGSPLEKLVSSVSDLPKRLDSRRRMSPEEFTEIMNQREQFYHKVNFSPPGDTSNLFPGTWYLERVDEMHRRKYARCP 507          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.779e-21
Identity = 53/134 (39.55%), Postives = 84/134 (62.69%), Query Frame = -1
Query:  289 KVQPSTLIPKQVGNMYTASPYAALASLIHNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNILSVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFY 690
            KV P+TL+ KQ+GN Y  S Y+ L SL+  K ++L GKRV+ FSYGSGL A+ FS K+ +      +++I+  +++  +L  R    PE F E + L E R+  K++V S +++ + PG++YL+ VD+   R Y
Sbjct:  312 KVAPTTLLAKQLGNTYCGSTYSGLLSLLDEKSNDLVGKRVLTFSYGSGLAASAFSFKVEK-----PINHIVEKVDLKNRLAKRVRVEPEIFTEKLSLRETRHNLKNYVPSDETTNMFPGSFYLSSVDNAGIRKY 440          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 58/141 (41.13%), Postives = 79/141 (56.03%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K + S  +    GNMYT+S Y  LASL+ H+   +L G R+  FSYGSGL A+ FS ++S+   P S    L  S  ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +YRR YA++P
Sbjct:  367 KTKNSLYLSTYNGNMYTSSLYGCLASLLAHHSAQDLAGSRIGAFSYGSGLAASFFSFRVSQDASPGSPLEKLVSSTSDLQKRLASRKRVSPEEFTEIMNQREQYYHKMNFSPPGDKNSLFPGTWYLERVDELYRRKYARRP 507          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS2_PIG (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Sus scrofa GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-20
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  283 KVQPSTLIPKQVGNMYTASPYAALASLIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAK 690
            K +PS  +    GNMYT+S Y  LASL+      +L G R+  FSYGSGL A+ +SL++S+   P S    L  SV ++  +L SR    PE F E+M   E  Y   +F    D + L PGT+YL  VD +YRR YA+
Sbjct:  367 KTKPSLYLSLHNGNMYTSSLYGCLASLLSQCSAQDLAGSRIGAFSYGSGLAASFYSLRVSQDASPGSPLEKLVSSVSDLPERLASRKRVSPEEFTEIMNQREQYYHKVNFTPPGDPNSLFPGTWYLERVDELYRRKYAR 505          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.738e-20
Identity = 58/141 (41.13%), Postives = 80/141 (56.74%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLI-HNKHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K + S  +    GNMYT+S Y  LASL+ H+   EL G R+  FSYGSGL A+ FS ++S+   P S  + L  S  ++  +L SR    PE F E+M   E  Y   +F    D++ L PGT+YL  VD  +RR YA++P
Sbjct:  367 KTKASLYLSTHNGNMYTSSLYGCLASLLSHHSAQELAGSRIGAFSYGSGLAASFFSFRVSQDAAPGSPLDKLVSSTSDLPKRLASRKCVSPEEFTEIMNQREQFYHKVNFSPPGDTNSLFPGTWYLERVDEQHRRKYARRP 507          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 55/141 (39.01%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K + S L+  Q GNMYT+S Y +LAS++      +L GKR+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD  +RR YA++P
Sbjct:  330 KTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470          
BLAST of CX044487 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 55/141 (39.01%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  277 KVQPSTLIPKQVGNMYTASPYAALASLIHN-KHSELDGKRVVLFSYGSGLTATMFSLKLSEGRHPFSLSNIL--SVMNVAGKLKSRHEFPPENFVEVMKLMEHRYGAKDFVTSKDSSLLAPGTYYLTEVDSMYRRFYAKKP 690
            K + S L+  Q GNMYT+S Y +LAS++      +L GKR+ +FSYGSGL AT++SLK+++   P S  + +  S+ ++  +L SR    P+ F E MKL E  +   +++       L  GT+YL  VD  +RR YA++P
Sbjct:  330 KTKASLLVSNQNGNMYTSSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLKVTQDATPGSALDKITASLCDLKSRLDSRTGVAPDVFAENMKLREDTHHLVNYIPQGSIDSLFEGTWYLVRVDEKHRRTYARRP 470          
The following BLAST results are available for this feature:
BLAST of CX044487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCS_ARATH5.309e-5872.44Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCS1_BLAGE3.840e-2443.97Hydroxymethylglutaryl-CoA synthase 1 OS=Blattella ... [more]
HMCS2_RAT8.007e-2243.26Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_MOUSE3.043e-2143.26Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCSA_DICDI6.779e-2139.55Hydroxymethylglutaryl-CoA synthase A OS=Dictyostel... [more]
HMCS2_BOVIN8.853e-2141.13Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_PIG3.364e-2041.73Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_HUMAN5.738e-2041.13Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS1_PONAB1.670e-1939.01Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_HUMAN1.670e-1939.01Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_17H03_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17H03-P5-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044487 ID=CX044487; Name=CX044487; organism=Citrus sinensis; type=EST; length=693bp
TTTTTTTTTTTTGCTAAATCAAGGCATTTCGGAAACTTTTATTACAAAGA
AAACAATTCACCGCTGATCGCATGCCTGCAGATGAACAACTACTATTTGC
TTTTGCATCACAAACTCAAGGAAGCACGGATATTTTTTAAGTACTGGCAA
CACCAATCTGCTTAATTAAAAACAACATTGAACAAGATGAATCAAATTCG
GGCGATACAAATAATAATTTGATCACCCTTAGTGACCATTTGCAAGTGAC
CCATTCTCGCAGTTGGTAACATCTGCAGGCTTCTTGGCATAGAATCTCCG
GTACATGGAGTCAACTTCAGTGAGATAGTATGTTCCTGGAGCCAAAAGGC
TACTGTCTTTGCTTGTTACAAAGTCTTTGGCTCCATATCTATGCTCCATT
AGCTTCATGACTTCCACAAAATTCTCTGGGGGAAACTCATGCCTTGATTT
CAACTTCCCTGCAACATTCATAACAGATAGGATGTTTGACAAGCTGAAGG
GATGACGACCTTCACTGAGTTTCAATGAGAACATCGTTGCAGTCAAACCA
CTTCCATACGAGAACAAAACCACTCGCTTGCCATCCAATTCACTGTGTTT
GTTGTGAATAAGGGAAGCCAATGCTGCATACGGAGATGCTGTGTACATGT
TACCAACTTGCTTCGGTATTAAAGTGGATGGTTGGACCTTTGC
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