CN189368

Overview
NameCN189368
Unique NameCN189368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL1_PONAB (Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 84/204 (41.18%), Postives = 119/204 (58.33%), Query Frame = 3
Query:   30 QVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDARPQTPAGIAGLSS 641
            Q+Q+ L  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+      +                      N +PLPNPW              +S++G     T +G +G S+
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQ-----EQFGGNPFASLVSNTSSGEG--------------SQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQST 358          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL1_HUMAN (Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 84/204 (41.18%), Postives = 119/204 (58.33%), Query Frame = 3
Query:   30 QVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPWMXXXXXXXXXXXXRSSSLGDARPQTPAGIAGLSS 641
            Q+Q+ L  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP L+A            NPFA+L+      +                      N +PLPNPW              +S++G     T +G +G S+
Sbjct:  174 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQ-----EQFGGNPFASLVSNTSSGEG--------------SQPSRTENRDPLPNPWAPQTSQSSSASSGTASTVGGTTGSTASGTSGQST 358          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL1_MOUSE (Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 79/170 (46.47%), Postives = 108/170 (63.53%), Query Frame = 3
Query:   30 QVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            Q+Q+ L  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+ +    +                      N +PLPNPW
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASLVSSSSSAEG--------------TQPSRTENRDPLPNPW 315          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL4_MOUSE (Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.633e-38
Identity = 80/184 (43.48%), Postives = 117/184 (63.59%), Query Frame = 3
Query:    3 VGAGLPEFEQVQQPLTR----NPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            +G G   F ++QQ + R    NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L G    + ++                    N  PLPNPW
Sbjct:  166 LGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESVPGGYNALRRMYTDIQEPMFTAAREQFGN------NPFSSLAGNSDNSSSQ---------------PLRTENREPLPNPW 328          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL4_HUMAN (Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 80/184 (43.48%), Postives = 117/184 (63.59%), Query Frame = 3
Query:    3 VGAGLPEFEQVQQPLTR----NPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEP-FLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            +G G   F ++QQ + R    NP ++ +IM  P+VQ++M+NP++MR++IM NPQM+++++RNPE++H+LN+P  +RQT+E ARNP +M+EMMRN DRA+SN+ES P G+N LRRMY  +QEP F  A    GN      NPF++L G    + ++                    N  PLPNPW
Sbjct:  171 LGLGSANFMELQQQMQRQLMSNPEMLSQIMENPLVQDMMSNPDLMRHMIMANPQMQQLMERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMFSAAREQFGN------NPFSSLAGNSDSSSSQ---------------PLRTENREPLPNPW 333          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL1_RAT (Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37
Identity = 77/170 (45.29%), Postives = 108/170 (63.53%), Query Frame = 3
Query:   30 QVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            Q+Q+ L  NP +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P+ +RQTLE ARNP +M+EMMRN +R +SN+ES P G+N LRRMY  +QEP LNA            NPFA+L+ +    +                      N +PLPNPW
Sbjct:  165 QMQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPNIMRQTLELARNPAMMQEMMRNQERDLSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASLVSSPSSAEG--------------TQPSRTENRDPLPNPW 315          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL2_HUMAN (Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.141e-36
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 3
Query:   30 QVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            Q+QQ L  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA++  +    +                      N +PLPNPW
Sbjct:  170 QMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFASVGSSSSSGEG--------------TQPSRTENRDPLPNPW 320          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL2_MOUSE (Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 80/183 (43.72%), Postives = 109/183 (59.56%), Query Frame = 3
Query:    3 VGAGLPEF----EQVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            +G   P F     Q+QQ L  +P +M +IM  P VQ++++NP++MR LIM NPQM+++I RNPE++H+LN+P  +RQTLE ARNP +M+EMMRN D A+SN+ES P G+N LRRMY  +QEP LNA            NPFA +  +    +                      N +PLPNPW
Sbjct:  168 LGLNSPNFTELRNQMQQQLLASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQ-----EQFGGNPFATVGSSSTSGEG--------------TQPSRTENRDPLPNPW 331          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 80/177 (45.20%), Postives = 108/177 (61.02%), Query Frame = 3
Query:   12 GLPEFEQVQQPLTRNPNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATS-MAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            G+P   Q    +  NP I +E+ N  ++ +L++NP+I R+++M NP+MRE+++ NPE+A +L+DP  LRQ+LE  RNPELMREMMRN DRAM NIE+ PEGFN+LRRMY  +QEP +NA +  A +    NSNP       Q    A                    PN+ PLPNPW
Sbjct:   96 GIPGVPQNINDMMNNPMI-QEMFNSRMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQSLEMMRNPELMREMMRNADRAMINIENHPEGFNLLRRMYTDIQEPLMNAANQQAASQNQTNSNPI------QTNTDAN-------------------PNSQPLPNPW 246          
BLAST of CN189368 vs. ExPASy Swiss-Prot
Match: UBQL3_MOUSE (Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 61/161 (37.89%), Postives = 93/161 (57.76%), Query Frame = 3
Query:   57 PNIMREIMNMPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPELAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATSMAGNAGNDNSNPFAALLGTQGGNQARXXXXXXXXXXXXXXXXXXAPNTNPLPNPW 539
            P ++ ++++ P +Q L++N  ++R L+++NP M+ +I +NPE+ HILN+P  +RQT+E  RNP +M+EMMR+ DRA+SN+ES P G+N+LR MY  + +P LNA       GN       A   T     +R                    N +PLPNPW
Sbjct:  165 PELVAQLVDDPFIQGLLSNTGLVRQLVLDNPHMQHLIQQNPEIGHILNNPEIMRQTMEFLRNPSMMQEMMRSQDRALSNLESIPGGYNVLRTMYTDIMDPMLNAVQEQFG-GNPFVTATTASTTTTSSQPSR------------------TENCDPLPNPW 306          
The following BLAST results are available for this feature:
BLAST of CN189368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UBQL1_PONAB2.457e-3941.18Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1[more]
UBQL1_HUMAN2.457e-3941.18Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2[more]
UBQL1_MOUSE3.547e-3846.47Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1[more]
UBQL4_MOUSE4.633e-3843.48Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1[more]
UBQL4_HUMAN6.051e-3843.48Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2[more]
UBQL1_RAT5.122e-3745.29Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV... [more]
UBQL2_HUMAN1.141e-3645.29Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2[more]
UBQL2_MOUSE1.490e-3643.72Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=1[more]
UBQL_DICDI5.664e-3645.20Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
UBQL3_MOUSE1.265e-2737.89Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189368 ID=CN189368; Name=CN189368; organism=Citrus sinensis; type=EST; length=693bp
GCGTTGGAGCTGGACTTCCAGAATTTGAACAAGTGCAGCAACCTTTGACC
CGGAACCCCAACATTATGAGAGAGATCATGAATATGCCTGTCGTGCAGAA
TCTTATGAATAACCCTGAGATAATGCGAAACTTGATAATGAACAATCCTC
AAATGCGTGAAATTATTGATCGAAACCCTGAGCTAGCACACATACTAAAT
GACCCTAGCACTCTGCGTCAGACACTTGAAGCTGCAAGAAATCCAGAGCT
CATGCGTGAAATGATGCGCAATACTGATAGAGCAATGAGCAATATTGAAT
CTTCTCCTGAGGGATTTAATATGCTGAGGCGCATGTATGAAACTGTGCAA
GAGCCATTTCTTAATGCTACCTCTATGGCTGGGAATGCTGGAAATGACAA
CTCAAACCCATTTGCAGCTCTTTTGGGTACTCAGGGTGGAAACCAAGCCA
GAGAAGGATCGAATAACCCATCTACCACTACGTCTGAATCTACCACTGGT
TCTCCTGCTCCAAACACTAACCCACTTCCTAATCCTTGGATGGCTGCTGG
AACTGGAGGTGCTCAAACAAACACCACAAGGTCAAGTTCTCTTGGGGATG
CTAGGCCACAGACACCTGCTGGAATAGCTGGACTTAGTTCCCCTGGTTTT
GAAGACATTTTCGGTACAATGCAGGACACCAATTCACTGAACC
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