CN189290

Overview
NameCN189290
Unique NameCN189290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2723 contig Csv1_Contig2723:1..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189290 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.894e-24
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 3 
Query:    3 RGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 191
            +GRALYAAEADR+RNWAENR R S TDAMEMYTENTWVSVFSLSVVCAFIIL ST  ++FPGT
Sbjct:  434 QGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496
[Close]
BLAST of CN189290 vs. ExPASy Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.219e-24
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 3 
Query:    6 GRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 191
            GRA+YAAEADRIRNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G    PGT
Sbjct:  444 GRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSG-GPLPGT 504
The following BLAST results are available for this feature:
BLAST of CN189290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NYC1_ARATH1.894e-2484.13Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
NYC1_ORYSJ4.219e-2488.71Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189290 ID=CN189290; Name=CN189290; organism=Citrus sinensis; type=EST; length=498bp
GACGGGGAAGGGCATTGTATGCTGCAGAAGCAGACCGGATACGGAACTGG
GCTGAAAATCGGGCACGGTTTTCCTTTACAGATGCAATGGAGATGTACAC
AGAGAACACATGGGTATCCGTGTTCTCCCTTTCCGTAGTTTGCGCCTTCA
TAATCCTCTCCAGCACAGGTAGCAACACATTTCCAGGCACCTGATTCTTT
TTACCTTCGGTTGCAACCAGAAAGCGTCAGAACTACAACAAGCTGGCACT
TTTAGTGTGAATTCACGGGCAATTTCAGGCCCTTAACCATATATGCAAGT
GTTCAGTTATCTTATTAGATCATTCATCCTGGGATAAAGTATGTACCGTA
CGTAGTCATAGTGTAGGTTTATGTAAAGATTTGAAAAAAAAAAAAGATAC
AAAATTTAGTGAAGAATTTTTTATTGTGGTAACACGTAATGCGTTAACGA
AATTGTAATGAACCCCATGAGTGAATAGAAGCTTTGTAATGAAAAAAA
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