EY676440

Overview
NameEY676440
Unique NameEY676440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.667e-62
Identity = 119/164 (72.56%), Postives = 137/164 (83.54%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  +VG+HVSLAL+KRGDGVVGLDNFNNYYDPSLK+AR++LL++ GIFV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRYA++NP SYVHSNIAGLV LLE CK+ANPQP+IVWASSSS YGLNE VPFS  ESD T Q        +   ++I HTY  +
Sbjct:   95 ATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFS--ESDRTDQPASLYAATKKAGEEITHTYNHI 256          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.461e-58
Identity = 114/164 (69.51%), Postives = 129/164 (78.66%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  +VGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   G+FV+EGDINDA LL KLF+ V FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LLE CKSANPQP+IVWASSSS YGLN  VPFS  E D T Q        +   ++IAHTY  +
Sbjct:   98 AAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFS--EKDRTDQPASLYAATKKAGEEIAHTYNHI 259          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 7.249e-58
Identity = 112/164 (68.29%), Postives = 128/164 (78.05%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  +VGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   GIF++EGDIND +LL KLF  V+FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LLE CKS NPQP+IVWASSSS YGLN  VPFS  E D T Q        +   ++IAHTY  +
Sbjct:  104 AAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFS--EKDKTDQPASLYAATKKAGEEIAHTYNHI 265          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.367e-56
Identity = 110/164 (67.07%), Postives = 127/164 (77.44%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  +VGTHVS ALK+RGDGV+GLDNFN+YYD SLK++R+ALL   G+F++EGDIND  LL KLF+ V FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LLE CKSANPQP+IVWASSSS YGLN  VPFS  E D T Q        +   ++IAHTY  +
Sbjct:   99 AAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFS--EKDRTDQPASLYAATKKAGEEIAHTYNHI 260          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.978e-56
Identity = 111/164 (67.68%), Postives = 125/164 (76.22%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  +VGTHVS+AL++RGDGV+GLDNFN YYDP LK+AR+ LL   G+FV+EGDINDA LL KLFD V FTHVMHLAAQAGVRYAMQNP SYV+SNIAG V LLE  KSANPQP+IVWASSSS YGLN  VPFS  E D T Q        +   + IAHTY  +
Sbjct:  103 ASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFS--EKDRTDQPASLYAATKKAGEGIAHTYNHI 264          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.729e-51
Identity = 99/164 (60.37%), Postives = 121/164 (73.78%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  +VG+H SLAL+KRGDGV+G DNFN+YYDPSLK+AR+ LL    +F++EGD+ND  LL KLFD V FTH++HLAAQAGVRYAM+NP SY+ SNIAG V LLE  K+ANPQP+IVWASSSS YGLN   PFSE         ++    K    ++IAHTY  +
Sbjct:  119 AAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAG--EEIAHTYNHI 280          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.888e-23
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 3
Query:   12 ADAWVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            A  ++G HVS  L + G  VVG+DN N+YYD SLK+AR  LL   G    + D+ D + +  LF +  F  V     +  VRY+++NPH+Y  SN+ G + +LE C+  N    +++ASSSS YGLN  +PFS  +S      ++    K   +  +AHTY  L
Sbjct:    8 AAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH-NKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANEL--MAHTYSHL 168          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.255e-21
Identity = 58/169 (34.32%), Postives = 95/169 (56.21%), Query Frame = 3
Query:   21 WVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLN-NHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSLLRPSSNS 524
            ++G HV+  L   G  VVG D    YYD +LK+ R A+L  ++G   +   + D   L +  +      ++HLAAQAGVRY+++NP +YV +N+ G   +LE  K+  P+  ++ AS+SS YG NE +PF+EA+       ++    K   ++ +AH+Y  L +  + S
Sbjct:   11 FIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK-HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKK--SMELMAHSYAHLYKVPTTS 176          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.023e-19
Identity = 56/161 (34.78%), Postives = 95/161 (59.01%), Query Frame = 3
Query:   21 WVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            ++G+H++  L K+G  V+G+D+ N+YY  SLK+ R   +        +  + +   L+K+F       V++LAAQAGVRY+++NP +Y+ SNI G + +LE  +  N Q ++++ASSSS YG N + PFS +++      ++    K   +  +AHTY  L
Sbjct:   11 FIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ-NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNEL--MAHTYSHL 168          
BLAST of EY676440 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.292e-18
Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 3
Query:   21 WVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGIFV-IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSFYGLNENVPFSEAESDGTSQLVFTRLPKRARVKKIAHTYQSL 503
            ++G H+S  L    +   V+G+DN NNYY+P LK+ R  +L N+  +  I+ D +D   L +         ++HL AQAGVRY++QNP +Y+ SN  G + + E  +  + +  +V+ASSSS YG N  +PFS  E D   + +      +   + +AH Y  L
Sbjct:   14 FIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIE-KVVYASSSSVYGGNRKIPFS--EDDRVDKPISLYASTKRSNELMAHVYHHL 174          
The following BLAST results are available for this feature:
BLAST of EY676440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GAE1_ARATH1.667e-6272.56UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE3_ARATH1.461e-5869.51UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE4_ARATH7.249e-5868.29UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE2_ARATH1.367e-5667.07UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE5_ARATH3.978e-5667.68UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE6_ARATH1.729e-5160.37UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
YCL2_ECO119.888e-2338.41Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
LPSL_RHIME9.255e-2134.32UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]
CAPI_STAAU1.023e-1934.78Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA3.292e-1834.76Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676440 ID=EY676440; Name=EY676440; organism=Citrus sinensis; type=EST; length=996bp
CGGACGCGTGGGCGGACGCGTGGGTTGGGACCCACGTGTCTTTGGCTTTA
AAGAAACGCGGAGACGGCGTCGTTGGACTCGACAATTTCAATAACTACTA
CGATCCCTCATTGAAGAAGGCGAGGAAGGCTTTGTTGAACAACCATGGCA
TTTTTGTAATTGAAGGTGATATCAATGACGCGAAATTATTAGCCAAGCTC
TTTGACGCTGTGGCTTTTACGCACGTGATGCATTTAGCGGCTCAAGCCGG
TGTTAGATACGCGATGCAGAATCCCCACTCGTACGTGCACAGCAATATCG
CTGGCCTCGTCACGCTCCTTGAGGCTTGCAAATCAGCCAATCCTCAGCCG
TCGATTGTGTGGGCCTCGTCGAGCTCATTCTACGGCTTAAACGAGAACGT
CCCATTCTCCGAGGCTGAATCGGACGGAACCAGCCAGCTAGTCTTTACGC
GGCTACCAAAAAGGGCCCGGGTGAAAAAAATTGCTCACACCTACCAATCC
CTTTTACGGCCCTCCTCAAATTCCGGGGCTGAAGGGTTTTTTCCCCCGGG
TACGGACCCCGGGGGGGCCGAACCGAATTAGGGGCTTAATTTCCGCTTAC
CAAAAAAAAAATTCCCCAAGGGGAAAACAAATCCCCGGTTTTAACCTGGT
GAAAAAAATCCAGTCCAAACTTGGCCCCAAAAATTTATCCTTCCATTTGG
CCAAAAACGCTGGAGGGGGTTATTATAGGGTTCACCAGGAAAACCATAGG
GGGAAAAAAAATATAGGGGGCAGTAAGGAAAAAAAAAAAAGCGAGGGCCC
ACCAACTACCTTAAAACAGAAAATTATTTATTAATATTAGGGGAAAAAAA
AATAGAAACCCCGGGACAATAGGAGAAAACCAAAGGAAATGGGAGAGGAA
ATGGATATTTGATTGGGGTGAAAAATGTAAACCCCCTTGATAGAAGAGTG
CTTGAAAACCACAGACCGACGATAAGAATGATGTATAGTGGATTAT
back to top