CN189260

Overview
NameCN189260
Unique NameCN189260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = -1
Query:  363 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 656
            GI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYLRA+I+E  R              G  VYE        SQ Y+RN++PVNLLEPN Q++ Q DQPPLQLV
Sbjct:  149 GISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQ--GTTVYESGVSSHDQSQHYNRNYIPVNLLEPNQQFSGQ-DQPPLQLV 248          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.475e-19
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  363 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 656
            GI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLR++I+E                  G VYE        S  Y+RN++ VNLLEPN   + Q DQPPLQLV
Sbjct:  149 GISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQ----GTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQ-DQPPLQLV 246          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.840e-18
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = -1
Query:  363 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 656
            GI R+RSKKNE+L AEIE+M+K+EI L N+N YLRA+I+ENERA             G   YE A  Q +D RN++ +N L+PN+ Y+RQ DQ  LQLV
Sbjct:  150 GISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMP-----GSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQ-DQTALQLV 242          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 52/100 (52.00%), Postives = 63/100 (63.00%), Query Frame = -1
Query:  363 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 656
            GI ++RSKKNE+L AEIE+M+KREI L N+N YLRA+I+E ERA             G   YE  P   Q   RN+L VN L+ N+ Y RQ DQP LQLV
Sbjct:  150 GISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQ-DQPSLQLV 248          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.264e-18
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  363 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQDDQPPLQLV 656
            GI ++RSKKNE+L AEIE+M+KRE+ L N+N YLRA+I+E ERA               + +E  P   Q   RN+L VN L+ N+ Y RQ DQPP+QLV
Sbjct:  150 GISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHYPRQ-DQPPIQLV 248          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = -1
Query:  363 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYE-PAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQLV 656
            GI ++R+KKNE+L AEIE+M+KREI L N+N YLRA+I+E ER+             G   Y+     Q +D RN+L VN L+ N+ Y RQ DQPPLQLV
Sbjct:  150 GISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMP------GSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQ-DQPPLQLV 242          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.735e-16
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = -1
Query:  366 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQPPLQL 656
            GI ++R++KNE+L AE+E+M+KRE++LQNDNMYLR+++ ENER                  Y+   + PYD RNFL VN+++    YA Q     LQL
Sbjct:  135 GIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERG---QQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQPTTLQL 229          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  363 IGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYE------PAASQPYD-RNFLPVNLLEP-NHQY--ARQDDQPPLQLV 653
            + R+RSKKNE+L AEI++M+KRE+ L NDN  LRA+I+ENER              GG  YE          QP+D RN+  V  L+P NH Y  A ++DQ  LQLV
Sbjct:  151 VNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENER-----NNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHHYSSAGREDQTALQLV 252          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  363 IGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYE------PAASQPYD-RNFLPVNLLEP-NHQY--ARQDDQPPLQLV 653
            I R+RSKKNE+L +EI++M+KRE+ L NDN  LRA+I+ENER              GG  YE         SQP+D RN+  V  L+P NH Y  A + DQ  LQLV
Sbjct:  151 ITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER-----NNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV 252          
BLAST of CN189260 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  381 GIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXQGGGHVYEPAASQ-PYD-RNFLPVNLLEPNHQYARQDDQ 656
            G+G++R++KNE+L AEIE+M++RE +LQNDNMYL+++++E+ER             G     E   +   YD RNFL  N++     Y  Q+D+
Sbjct:  176 GLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERG-----LQTVNMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQEDR 264          
The following BLAST results are available for this feature:
BLAST of CN189260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AGL1_ARATH3.585e-2155.34Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL5_ARATH7.475e-1953.40Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_PANGI2.840e-1852.53Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_TOBAC6.328e-1852.00Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC8.264e-1849.00Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY3.472e-1650.00Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MADS3_ORYSJ7.735e-1643.88MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_BRANA7.240e-1445.79Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH9.456e-1446.73Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MAD58_ORYSJ8.850e-1239.36MADS-box transcription factor 58 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189260 ID=CN189260; Name=CN189260; organism=Citrus sinensis; type=EST; length=656bp
TTTTTTTTTTTTTTTTTATCATGGCATCCTAGTCGTTCAACGTCATTGAA
AATAATAGATGAAACAAAAATTACAGAGTAGCAAGGATGAATGTAAATGT
AAGCAGGAGATATGTTTATGAAATGTTTAGGTGCATAATTAATACATGAA
GGAATCCCTTATTTAACAACATCACACAGTTAAGATTCAAACATTAGCTA
GCGAAAACCACGAGGCCTTCGTTATATGCGGTGGATTTTGAAGAAACTGG
CTTTCACCTTTTCAATTTACGTACGTACCATACTCTCATCAAGCTGATAG
ATGCAAGGTAGCAGAAAGGCTTTTGCATATCTCACTGGTAGATGCAGCTA
TCCTGCAATTCAAACAAGTTGAAGAGGGGGCTGATCGTCTTGGCGAGCGT
ACTGGTGATTGGGTTCCAAGAGGTTTACAGGAAGGAAGTTTCGGTCATAG
GGCTGTGAAGCCGCGGGCTCGTACACATGCCCTCCTCCTTGCTGCATCAT
GCTTTCTGATTGCCGTTCTTGTTGTGCTCTCTCATTTTCAGATATCCTTG
CTCTCAGGTACATGTTATCATTTTGAAGCTGAATTTCCCTCTTCTCCATG
AACTCGATTTCAGCTAATAACATTTCGTTCTTCTTGGATCTGACTCTGCC
GATTCC
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