EY676438

Overview
NameEY676438
Unique NameEY676438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEFS (Co-chaperone protein hscB homolog OS=Pseudomonas fluorescens (strain SBW25) GN=hscB PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.453e-47
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCHFALFELQP+FRLDLEQLATRYRELARGVHPDRFADASEREQRLALE+SASLNEAYQTLKNPPKRARYLLAM G E+P+EVTV DPD L+
Sbjct:    1 MGTPCHFALFELQPNFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEKSASLNEAYQTLKNPPKRARYLLAMNGGEVPIEVTVHDPDFLM 95          

HSP 2 Score: 35.4242 bits (80), Expect = 3.453e-47
Identity = 19/36 (52.78%), Postives = 24/36 (66.67%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADLGRNRGLSAAV*KWAQDE 408
            +QQMQW EEL++LQDEAD+         + K AQDE
Sbjct:   95 MQQMQWREELEDLQDEADVAGVAVFKRRL-KTAQDE 129          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPW (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain W619) GN=hscB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.377e-42
Identity = 74/95 (77.89%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCHFALF+LQP FRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+GG E+P EVTV DPD L+
Sbjct:    1 MGTPCHFALFDLQPCFRLDLDKLATRYRELAREVHPDRFADASEREQRVALEKSAALNDAYQTLRSAPRRARYLLAIGGHEVPQEVTVHDPDFLL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 1.377e-42
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQW EEL+ELQDEADL
Sbjct:   95 LQQMQWREELEELQDEADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSESM (Co-chaperone protein hscB homolog OS=Pseudomonas syringae pv. tomato GN=hscB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.339e-42
Identity = 78/95 (82.11%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G+PCHFALFEL+P F+LDL+QLATRYRELAR VHPDRFADA EREQRLALE+SASLNEAYQTLK+PPKRARYLLAM G E+PLEVTV DP+ L+
Sbjct:    1 MGSPCHFALFELKPEFQLDLDQLATRYRELARNVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPKRARYLLAMNGNEVPLEVTVHDPEFLL 95          

HSP 2 Score: 31.187 bits (69), Expect = 2.339e-42
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADLGRNRGLSAAV*KWAQDE 408
            LQQMQ  E+L++LQDEADL         + K AQDE
Sbjct:   95 LQQMQLREDLEDLQDEADLAGVATFKRQL-KVAQDE 129          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPG (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain GB-1) GN=hscB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.339e-42
Identity = 73/95 (76.84%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCH+ALF+LQPSFRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+ G E+P EVTV DPD L+
Sbjct:    1 MGTPCHYALFDLQPSFRLDLDKLATRYRELAREVHPDRFADASEREQRIALEKSAALNDAYQTLRSAPRRARYLLAISGHEVPQEVTVHDPDFLL 95          

HSP 2 Score: 38.5058 bits (88), Expect = 2.339e-42
Identity = 22/35 (62.86%), Postives = 25/35 (71.43%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADLGRNRGLSAAV*KWAQD 405
            LQQMQW EEL+ELQDEADL    G+     K+AQD
Sbjct:   95 LQQMQWREELEELQDEADLD-GVGVFKKRLKFAQD 128          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPK (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain KT2440) GN=hscB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.047e-42
Identity = 73/95 (76.84%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCH+ALF+LQPSFRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+ G E+P EVTV DPD L+
Sbjct:    1 MGTPCHYALFDLQPSFRLDLDKLATRYRELAREVHPDRFADASEREQRIALEKSAALNDAYQTLRSAPRRARYLLAISGHEVPQEVTVHDPDFLL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 3.047e-42
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQW EEL+ELQDEADL
Sbjct:   95 LQQMQWREELEELQDEADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPF (Co-chaperone protein hscB homolog OS=Pseudomonas fluorescens (strain Pf0-1) GN=hscB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.971e-42
Identity = 76/95 (80.00%), Postives = 85/95 (89.47%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G PCHFALFELQP FRLDLEQLATRYRELARGVHPDRFADASEREQR ALEQSA LN+AYQTLK+P +RARYLL + G E+P+EVTV DP+ L+
Sbjct:    1 MGIPCHFALFELQPGFRLDLEQLATRYRELARGVHPDRFADASEREQRSALEQSARLNDAYQTLKSPAQRARYLLTISGHEVPMEVTVHDPEFLL 95          

HSP 2 Score: 35.039 bits (79), Expect = 3.971e-42
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQW EEL++LQD ADL
Sbjct:   95 LQQMQWREELEDLQDSADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEP1 (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hscB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.971e-42
Identity = 73/95 (76.84%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCH+ALF+LQPSFRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+ G E+P EVTV DPD L+
Sbjct:    1 MGTPCHYALFDLQPSFRLDLDKLATRYRELAREVHPDRFADASEREQRVALEKSAALNDAYQTLRSAPRRARYLLAISGHEVPQEVTVHDPDFLL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 3.971e-42
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQW EEL+ELQDEADL
Sbjct:   95 LQQMQWREELEELQDEADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEE4 (Co-chaperone protein hscB homolog OS=Pseudomonas entomophila (strain L48) GN=hscB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.743e-42
Identity = 72/95 (75.79%), Postives = 88/95 (92.63%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCH+ALF+LQP+FRLDL++LA RYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+GG E+P EVTV DPD L+
Sbjct:    1 MGTPCHYALFDLQPAFRLDLDKLAVRYRELAREVHPDRFADASEREQRVALEKSAALNDAYQTLRSAPRRARYLLAIGGHEVPQEVTVHDPDFLL 95          

HSP 2 Score: 38.1206 bits (87), Expect = 6.743e-42
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQW EEL+ELQDEADL
Sbjct:   95 LQQMQWREELEELQDEADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEMY (Co-chaperone protein hscB homolog OS=Pseudomonas mendocina (strain ymp) GN=hscB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.301e-41
Identity = 78/95 (82.11%), Postives = 84/95 (88.42%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +G PCHFALF+LQPSFRLDLEQLA RYRELAR VHPDRFADA EREQRLALE+SA LNEAYQ LK P +RARYLLA+ G ELPLEVTVQDPD L+
Sbjct:    1 MGNPCHFALFDLQPSFRLDLEQLAARYRELARQVHPDRFADAGEREQRLALERSACLNEAYQVLKTPSQRARYLLALRGPELPLEVTVQDPDFLL 95          

HSP 2 Score: 31.9574 bits (71), Expect = 4.301e-41
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            LQQMQ  EEL+ELQD+ADL
Sbjct:   95 LQQMQLREELEELQDDADL 113          
BLAST of EY676438 vs. ExPASy Swiss-Prot
Match: HSCB_PSEU5 (Co-chaperone protein hscB homolog OS=Pseudomonas stutzeri (strain A1501) GN=hscB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 9.996e-37
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDSLI 302
            +GTPCHFALF+L+P F LDL QLA RYRELAR VHPDRFADA E EQR ALE+SA+LNEAYQTLK+P +RARYLLA+ G ++PLE TVQDP  L+
Sbjct:    1 MGTPCHFALFDLKPDFELDLAQLADRYRELARQVHPDRFADAGESEQRQALERSANLNEAYQTLKSPSRRARYLLALEGHDVPLEATVQDPAFLM 95          

HSP 2 Score: 30.8018 bits (68), Expect = 9.996e-37
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  301 LQQMQWPEELKELQDEADL 357
            +QQM W EEL+EL ++ADL
Sbjct:   95 MQQMHWREELEELHEQADL 113          
The following BLAST results are available for this feature:
BLAST of EY676438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
HSCB_PSEFS3.453e-4789.47Co-chaperone protein hscB homolog OS=Pseudomonas f... [more]
HSCB_PSEPW1.377e-4277.89Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSESM2.339e-4282.11Co-chaperone protein hscB homolog OS=Pseudomonas s... [more]
HSCB_PSEPG2.339e-4276.84Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEPK3.047e-4276.84Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEPF3.971e-4280.00Co-chaperone protein hscB homolog OS=Pseudomonas f... [more]
HSCB_PSEP13.971e-4276.84Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEE46.743e-4275.79Co-chaperone protein hscB homolog OS=Pseudomonas e... [more]
HSCB_PSEMY4.301e-4182.11Co-chaperone protein hscB homolog OS=Pseudomonas m... [more]
HSCB_PSEU59.996e-3773.68Co-chaperone protein hscB homolog OS=Pseudomonas s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-F08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676438 ID=EY676438; Name=EY676438; organism=Citrus sinensis; type=EST; length=756bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATAGTCTGA
TTGCAGCAGATGCAATGGCCCGAGGAGCTCAAAGAACTGCAGGACGAGGC
CGATCTGGGCCGGAATCGCGGTCTTTCAGCCGCCGTCTGAAAGTGGGCCC
AGGATGAAACTCCAACGAAAGCCTTTCCCCACCCGGTTGGGGAGGACCCA
CCGCAACCTGGGACAGGGCCAAACCCCGGATGCCGGGCCCATGGCCATTT
CCTTCCAAAAACCCCCCTTACAAATGGCCCCAATTTAAAAAAACGCCCCC
CAAAAATAAAACCCGTGGCCCCCCCGGTTGGCCCCCCCGGAAAAAAAAAA
AAATTCCCGGTTATCCCTGGCCCCCACTGGAAAAATACGCCAAAACCCGG
TGTCAAATTCCCCCTCAACCCCCACCACCCCCCTCCCCGGGGGGGGGGGG
GAATTAAAATTGGGGCAACAACATAAATTTTCCGGGGGGGGCCCTCTATT
TGTTGC
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